MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:18.6 nTPM
HPA:18.6 nTPM
GTEx:23.8 nTPM
FANTOM5:59.7 Scaled Tags Per Million
Pig:6.0 nTPM
Mouse:19.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.9
2666 Male, age 74, left hemisphere 19.5
2019 Male, age 18, unknown 18.4
2219 Male, age 76, both hemispheres 18.4
1833 Male, age 53, unknown 18.1
1870 Female, age 42, unknown 18.1
2411 Female, age 72, unknown 18.0
1827 Male, age 72, unknown 17.6
1830 Male, age 51, unknown 17.6
2828 Female, age 72, unknown 16.6
2586 Male, age 75, left hemisphere 16.3
Dorsal raphe nucleus
nTPM: 16.7
2750 Male, age 76, both hemispheres 17.6
1828 Male, age 53, unknown 17.3
2016 Female, age 72, unknown 17.1
2047 Male, age 72, unknown 16.4
2298 Female, age 72, unknown 15.2
Inferior colliculus
nTPM: 17.5
2849 Male, age 72, unknown 18.3
2097 Female, age 72, unknown 17.3
1890 Male, age 53, unknown 17.2
1848 Female, age 42, unknown 17.1
Median raphe nucleus
nTPM: 16.7
2220 Male, age 76, midline 16.7
Pedunculopontine tegmental nucleus
nTPM: 18.3
2334 Male, age 80, both hemispheres 18.6
2338 Male, age 61, both hemispheres 18.4
1921 Female, age 85, both hemispheres 18.0
Periaquaductal grey, anterior
nTPM: 16.5
1947 Male, age 18, unknown 17.1
1795 Male, age 51, unknown 16.3
2502 Female, age 75, unknown 16.1
Periaquaductal grey, dorsal
nTPM: 17.4
1831 Male, age 72, unknown 17.7
2464 Female, age 72, unknown 17.7
2850 Male, age 76, both hemispheres 17.4
1840 Male, age 53, unknown 16.9
Periaquaductal grey, lateral
nTPM: 16.2
2053 Male, age 18, unknown 17.3
2140 Male, age 76, both hemispheres 16.4
2272 Male, age 74, both hemispheres 15.0
Pretectal area
nTPM: 17.5
1816 Male, age 51, unknown 19.3
1815 Male, age 53, unknown 18.5
1944 Female, age 72, unknown 18.5
1817 Female, age 42, unknown 18.3
2007 Male, age 72, unknown 18.3
2825 Male, age 18, unknown 17.2
2316 Male, age 76, right hemisphere 17.0
2224 Female, age 72, unknown 16.7
2407 Male, age 75, both hemispheres 16.7
2667 Female, age 75, unknown 16.3
2273 Male, age 74, both hemispheres 16.1
Red nucleus
nTPM: 18.6
2725 Female, age 75, unknown 21.5
2588 Male, age 74, left hemisphere 20.1
2503 Female, age 72, unknown 19.3
2823 Male, age 76, right hemisphere 19.1
1821 Female, age 72, unknown 18.6
2584 Male, age 75, left hemisphere 18.4
1954 Female, age 42, unknown 18.3
1904 Male, age 53, unknown 18.2
1865 Male, age 51, unknown 17.8
2227 Male, age 72, unknown 17.5
2769 Male, age 72, unknown 17.5
2785 Male, age 18, unknown 17.2
Substantia nigra
nTPM: 18.3
2241 Male, age 72, unknown 19.1
1916 Female, age 42, unknown 18.8
2665 Male, age 74, both hemispheres 18.7
2409 Female, age 72, unknown 18.6
1941 Male, age 53, unknown 18.5
1889 Female, age 72, unknown 18.2
2590 Female, age 75, unknown 18.1
2583 Male, age 75, right hemisphere 17.9
1851 Male, age 51, unknown 17.8
2699 Male, age 18, unknown 17.8
Superior colliculus
nTPM: 17.4
1895 Male, age 76, right hemisphere 18.8
2587 Male, age 74, left hemisphere 18.3
2087 Female, age 72, unknown 17.7
1839 Male, age 51, unknown 17.6
1913 Female, age 42, unknown 17.5
1995 Male, age 72, unknown 17.4
2261 Male, age 18, unknown 17.1
2668 Female, age 75, unknown 16.8
1796 Male, age 53, unknown 16.3
2664 Male, age 75, both hemispheres 16.0
Ventral tegmental area
nTPM: 17.3
2223 Female, age 72, unknown 17.8
2021 Male, age 53, unknown 17.6
1915 Female, age 42, unknown 17.3
2410 Female, age 72, unknown 17.2
1942 Male, age 51, unknown 17.1
2218 Male, age 76, both hemispheres 17.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.8
Samples: 139

Max nTPM: 66.6
Min nTPM: 8.6
Std nTPM: 8.1
Median nTPM: 22.3
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 66.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 51.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 48.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 46.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 46.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 43.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 42.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 40.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 38.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 34.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 33.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.7
FF:10158-103A5 76 years, female 59.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.0
Pig sample Sample description nTPM
Midbrain
nTPM: 5.7
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.9
Sample A Female 5.8
Sample B Female 6.7
Sample C Male 4.9
Sample D Male 5.4
Periaqueductal gray
nTPM: 5.9
Samples: 3

Max nTPM: 6.1
Min nTPM: 5.6
Sample B Female 5.6
Sample C Male 6.0
Sample D Male 6.1
Substantia nigra
nTPM: 6.0
Samples: 4

Max nTPM: 6.5
Min nTPM: 5.2
Sample A Female 6.2
Sample B Female 6.2
Sample C Male 6.5
Sample D Male 5.2
Superior colliculi
nTPM: 5.7
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.1
Sample A Female 5.3
Sample B Female 7.0
Sample C Male 5.1
Sample D Male 5.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.6
Samples: 4

Max nTPM: 20.5
Min nTPM: 19.1
Sample A Male 20.5
Sample B Male 19.1
Sample C Female 19.7
Sample D Female 19.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71992049 Antisense, RP_051012_04_A09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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