MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:98.0 nTPM
HPA:98.0 nTPM
GTEx:7.4 nTPM
FANTOM5:50.2 Scaled Tags Per Million
Pig:146.8 nTPM
Mouse:67.2 nTPM
Allen mouse:7.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 98.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.1
1827 Male, age 72, unknown 108.7
2828 Female, age 72, unknown 65.0
2666 Male, age 74, left hemisphere 39.9
1870 Female, age 42, unknown 33.2
2019 Male, age 18, unknown 32.7
2586 Male, age 75, left hemisphere 9.3
1830 Male, age 51, unknown 2.1
1833 Male, age 53, unknown 0.0
2219 Male, age 76, both hemispheres 0.0
2411 Female, age 72, unknown 0.0
Dorsal raphe nucleus
nTPM: 0.0
1828 Male, age 53, unknown 0.0
2016 Female, age 72, unknown 0.0
2047 Male, age 72, unknown 0.0
2298 Female, age 72, unknown 0.0
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 56.9
2097 Female, age 72, unknown 117.2
1890 Male, age 53, unknown 70.7
2849 Male, age 72, unknown 30.7
1848 Female, age 42, unknown 9.0
Median raphe nucleus
nTPM: 0.0
2220 Male, age 76, midline 0.0
Pedunculopontine tegmental nucleus
nTPM: 0.0
1921 Female, age 85, both hemispheres 0.1
2334 Male, age 80, both hemispheres 0.0
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 56.6
1795 Male, age 51, unknown 126.3
1947 Male, age 18, unknown 32.2
2502 Female, age 75, unknown 11.4
Periaquaductal grey, dorsal
nTPM: 38.4
1831 Male, age 72, unknown 75.6
1840 Male, age 53, unknown 30.2
2464 Female, age 72, unknown 24.0
2850 Male, age 76, both hemispheres 24.0
Periaquaductal grey, lateral
nTPM: 34.0
2053 Male, age 18, unknown 42.8
2272 Male, age 74, both hemispheres 36.7
2140 Male, age 76, both hemispheres 22.5
Pretectal area
nTPM: 98.0
1816 Male, age 51, unknown 220.3
1817 Female, age 42, unknown 202.0
1815 Male, age 53, unknown 186.3
1944 Female, age 72, unknown 182.9
2007 Male, age 72, unknown 154.0
2667 Female, age 75, unknown 46.0
2825 Male, age 18, unknown 32.3
2273 Male, age 74, both hemispheres 18.6
2316 Male, age 76, right hemisphere 16.2
2224 Female, age 72, unknown 10.8
2407 Male, age 75, both hemispheres 8.8
Red nucleus
nTPM: 5.2
2785 Male, age 18, unknown 40.6
2725 Female, age 75, unknown 16.9
2588 Male, age 74, left hemisphere 3.7
2584 Male, age 75, left hemisphere 1.1
1821 Female, age 72, unknown 0.0
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
1954 Female, age 42, unknown 0.0
2227 Male, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
2769 Male, age 72, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 11.7
1889 Female, age 72, unknown 88.9
2590 Female, age 75, unknown 13.6
2665 Male, age 74, both hemispheres 9.6
2583 Male, age 75, right hemisphere 2.7
2409 Female, age 72, unknown 2.5
1851 Male, age 51, unknown 0.0
1916 Female, age 42, unknown 0.0
1941 Male, age 53, unknown 0.0
2241 Male, age 72, unknown 0.0
2699 Male, age 18, unknown 0.0
Superior colliculus
nTPM: 58.3
1796 Male, age 53, unknown 137.3
2087 Female, age 72, unknown 116.1
1913 Female, age 42, unknown 112.0
1995 Male, age 72, unknown 73.6
2261 Male, age 18, unknown 53.0
1839 Male, age 51, unknown 32.0
2664 Male, age 75, both hemispheres 17.9
2668 Female, age 75, unknown 16.5
2587 Male, age 74, left hemisphere 14.3
1895 Male, age 76, right hemisphere 10.3
Ventral tegmental area
nTPM: 0.0
2218 Male, age 76, both hemispheres 0.5
1915 Female, age 42, unknown 0.0
1942 Male, age 51, unknown 0.0
2021 Male, age 53, unknown 0.0
2223 Female, age 72, unknown 0.0
2410 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.4
Samples: 139

Max nTPM: 18.8
Min nTPM: 1.9
Std nTPM: 3.1
Median nTPM: 6.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 18.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 16.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 16.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 16.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 15.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 15.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 15.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 15.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 13.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 12.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 12.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.2
FF:10158-103A5 76 years, female 50.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 146.8
Pig sample Sample description nTPM
Midbrain
nTPM: 146.8
Samples: 4

Max nTPM: 308.9
Min nTPM: 28.3
Sample A Female 29.1
Sample B Female 28.3
Sample C Male 308.9
Sample D Male 221.0
Periaqueductal gray
nTPM: 67.0
Samples: 3

Max nTPM: 81.5
Min nTPM: 53.3
Sample B Female 81.5
Sample C Male 53.3
Sample D Male 66.2
Substantia nigra
nTPM: 27.8
Samples: 4

Max nTPM: 33.1
Min nTPM: 21.5
Sample A Female 21.5
Sample B Female 29.6
Sample C Male 26.8
Sample D Male 33.1
Superior colliculi
nTPM: 138.1
Samples: 4

Max nTPM: 231.5
Min nTPM: 69.2
Sample A Female 137.3
Sample B Female 69.2
Sample C Male 231.5
Sample D Male 114.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 67.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 67.2
Samples: 4

Max nTPM: 81.0
Min nTPM: 59.8
Sample A Male 65.4
Sample B Male 59.8
Sample C Female 81.0
Sample D Female 62.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.5
100055043 Antisense, RP_090205_04_F07, Mouse strain C57BL/6J (56 days, male) 8.4
100055048 Antisense, RP_090205_04_F07, Mouse strain C57BL/6J (56 days, male) 7.8
79677347 Antisense, RP_071204_02_A04, Mouse strain C57BL/6J (56 days, male) 7.4
72339557 Antisense, RP_050725_03_B11, Mouse strain C57BL/6J (56 days, male) 6.9
100055049 Antisense, RP_090205_04_F07, Mouse strain C57BL/6J (56 days, male) 6.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.