MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:37.5 nTPM
HPA:37.5 nTPM
GTEx:71.5 nTPM
FANTOM5:4.0 Scaled Tags Per Million
Pig:156.0 nTPM
Mouse:124.5 nTPM
Allen mouse:20.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.9
2019 Male, age 18, unknown 42.2
2219 Male, age 76, both hemispheres 33.1
2411 Female, age 72, unknown 32.8
1827 Male, age 72, unknown 17.6
1833 Male, age 53, unknown 16.2
1870 Female, age 42, unknown 14.3
2666 Male, age 74, left hemisphere 13.2
1830 Male, age 51, unknown 12.8
2586 Male, age 75, left hemisphere 9.4
2828 Female, age 72, unknown 7.9
Dorsal raphe nucleus
nTPM: 21.8
2298 Female, age 72, unknown 37.4
2750 Male, age 76, both hemispheres 25.9
2047 Male, age 72, unknown 20.2
1828 Male, age 53, unknown 18.3
2016 Female, age 72, unknown 7.0
Inferior colliculus
nTPM: 23.9
2097 Female, age 72, unknown 35.4
1890 Male, age 53, unknown 24.8
1848 Female, age 42, unknown 23.5
2849 Male, age 72, unknown 11.9
Median raphe nucleus
nTPM: 37.5
2220 Male, age 76, midline 37.5
Pedunculopontine tegmental nucleus
nTPM: 35.5
1921 Female, age 85, both hemispheres 43.4
2334 Male, age 80, both hemispheres 38.0
2338 Male, age 61, both hemispheres 25.0
Periaquaductal grey, anterior
nTPM: 16.8
2502 Female, age 75, unknown 22.4
1795 Male, age 51, unknown 16.2
1947 Male, age 18, unknown 11.8
Periaquaductal grey, dorsal
nTPM: 11.1
1831 Male, age 72, unknown 16.3
2464 Female, age 72, unknown 10.1
2850 Male, age 76, both hemispheres 9.2
1840 Male, age 53, unknown 8.7
Periaquaductal grey, lateral
nTPM: 7.0
2272 Male, age 74, both hemispheres 11.5
2053 Male, age 18, unknown 5.2
2140 Male, age 76, both hemispheres 4.3
Pretectal area
nTPM: 29.6
1944 Female, age 72, unknown 61.8
1817 Female, age 42, unknown 54.5
2007 Male, age 72, unknown 54.2
1816 Male, age 51, unknown 42.6
2667 Female, age 75, unknown 37.5
1815 Male, age 53, unknown 29.7
2224 Female, age 72, unknown 24.0
2825 Male, age 18, unknown 9.0
2316 Male, age 76, right hemisphere 5.7
2407 Male, age 75, both hemispheres 5.5
2273 Male, age 74, both hemispheres 1.5
Red nucleus
nTPM: 15.3
2785 Male, age 18, unknown 36.3
1821 Female, age 72, unknown 28.2
1954 Female, age 42, unknown 19.8
2584 Male, age 75, left hemisphere 18.0
2823 Male, age 76, right hemisphere 16.1
2227 Male, age 72, unknown 14.3
2769 Male, age 72, unknown 14.0
1865 Male, age 51, unknown 11.6
2503 Female, age 72, unknown 10.8
1904 Male, age 53, unknown 9.7
2588 Male, age 74, left hemisphere 5.1
2725 Female, age 75, unknown 0.0
Substantia nigra
nTPM: 29.4
1941 Male, age 53, unknown 62.7
1889 Female, age 72, unknown 49.0
1916 Female, age 42, unknown 48.6
2665 Male, age 74, both hemispheres 30.0
1851 Male, age 51, unknown 28.9
2241 Male, age 72, unknown 27.8
2409 Female, age 72, unknown 22.3
2699 Male, age 18, unknown 13.3
2583 Male, age 75, right hemisphere 5.5
2590 Female, age 75, unknown 5.5
Superior colliculus
nTPM: 19.8
2668 Female, age 75, unknown 58.1
2087 Female, age 72, unknown 40.5
1895 Male, age 76, right hemisphere 30.8
2261 Male, age 18, unknown 15.8
1839 Male, age 51, unknown 15.2
1796 Male, age 53, unknown 14.8
1913 Female, age 42, unknown 9.2
1995 Male, age 72, unknown 5.2
2664 Male, age 75, both hemispheres 5.0
2587 Male, age 74, left hemisphere 3.5
Ventral tegmental area
nTPM: 25.2
2218 Male, age 76, both hemispheres 44.9
2410 Female, age 72, unknown 35.6
1915 Female, age 42, unknown 31.4
1942 Male, age 51, unknown 18.6
2021 Male, age 53, unknown 10.6
2223 Female, age 72, unknown 10.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 71.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.5
Samples: 139

Max nTPM: 574.1
Min nTPM: 0.8
Std nTPM: 84.3
Median nTPM: 42.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 574.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 439.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 316.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 265.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 254.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 222.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 216.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 202.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 199.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 195.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 177.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.0
FF:10158-103A5 76 years, female 4.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 156.0
Pig sample Sample description nTPM
Midbrain
nTPM: 113.3
Samples: 4

Max nTPM: 183.6
Min nTPM: 22.2
Sample A Female 22.2
Sample B Female 89.7
Sample C Male 183.6
Sample D Male 157.8
Periaqueductal gray
nTPM: 83.7
Samples: 3

Max nTPM: 103.2
Min nTPM: 67.6
Sample B Female 80.4
Sample C Male 103.2
Sample D Male 67.6
Substantia nigra
nTPM: 120.9
Samples: 4

Max nTPM: 183.4
Min nTPM: 43.3
Sample A Female 183.4
Sample B Female 79.3
Sample C Male 177.5
Sample D Male 43.3
Superior colliculi
nTPM: 156.0
Samples: 4

Max nTPM: 226.8
Min nTPM: 60.7
Sample A Female 178.4
Sample B Female 60.7
Sample C Male 226.8
Sample D Male 157.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 124.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 124.5
Samples: 4

Max nTPM: 134.4
Min nTPM: 114.4
Sample A Male 114.4
Sample B Male 125.1
Sample C Female 134.4
Sample D Female 124.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.2
71836833 Antisense, RP_051017_02_B08, Mouse strain C57BL/6J (56 days, male) 21.2
67765717 Antisense, RP_040916_01_E12, Mouse strain C57BL/6J (56 days, male) 19.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.