MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:70.1 nTPM
HPA:70.1 nTPM
GTEx:62.5 nTPM
FANTOM5:127.5 Scaled Tags Per Million
Pig:16.7 nTPM
Mouse:1.3 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.4
2019 Male, age 18, unknown 62.7
2586 Male, age 75, left hemisphere 59.2
1830 Male, age 51, unknown 58.5
2411 Female, age 72, unknown 57.7
1833 Male, age 53, unknown 53.9
1870 Female, age 42, unknown 53.3
2828 Female, age 72, unknown 49.6
2666 Male, age 74, left hemisphere 40.0
1827 Male, age 72, unknown 35.2
2219 Male, age 76, both hemispheres 34.2
Dorsal raphe nucleus
nTPM: 38.7
2750 Male, age 76, both hemispheres 68.5
2016 Female, age 72, unknown 38.0
1828 Male, age 53, unknown 36.5
2047 Male, age 72, unknown 26.9
2298 Female, age 72, unknown 23.6
Inferior colliculus
nTPM: 35.4
1890 Male, age 53, unknown 39.0
1848 Female, age 42, unknown 36.3
2849 Male, age 72, unknown 33.5
2097 Female, age 72, unknown 32.7
Median raphe nucleus
nTPM: 33.2
2220 Male, age 76, midline 33.2
Pedunculopontine tegmental nucleus
nTPM: 47.4
2338 Male, age 61, both hemispheres 57.4
2334 Male, age 80, both hemispheres 46.3
1921 Female, age 85, both hemispheres 38.5
Periaquaductal grey, anterior
nTPM: 31.9
1947 Male, age 18, unknown 32.9
1795 Male, age 51, unknown 31.9
2502 Female, age 75, unknown 31.0
Periaquaductal grey, dorsal
nTPM: 26.5
2464 Female, age 72, unknown 38.7
1831 Male, age 72, unknown 28.1
1840 Male, age 53, unknown 20.5
2850 Male, age 76, both hemispheres 18.9
Periaquaductal grey, lateral
nTPM: 28.4
2272 Male, age 74, both hemispheres 35.7
2053 Male, age 18, unknown 29.0
2140 Male, age 76, both hemispheres 20.5
Pretectal area
nTPM: 34.5
2316 Male, age 76, right hemisphere 46.7
2407 Male, age 75, both hemispheres 43.0
1815 Male, age 53, unknown 42.3
2007 Male, age 72, unknown 40.1
1817 Female, age 42, unknown 38.8
2825 Male, age 18, unknown 33.2
2273 Male, age 74, both hemispheres 31.8
2224 Female, age 72, unknown 28.7
1944 Female, age 72, unknown 26.0
1816 Male, age 51, unknown 25.7
2667 Female, age 75, unknown 23.8
Red nucleus
nTPM: 70.1
2769 Male, age 72, unknown 84.8
2227 Male, age 72, unknown 82.7
2785 Male, age 18, unknown 81.8
1904 Male, age 53, unknown 79.4
2503 Female, age 72, unknown 78.7
1865 Male, age 51, unknown 70.7
2588 Male, age 74, left hemisphere 67.3
1821 Female, age 72, unknown 63.7
1954 Female, age 42, unknown 62.0
2823 Male, age 76, right hemisphere 59.2
2725 Female, age 75, unknown 58.2
2584 Male, age 75, left hemisphere 52.6
Substantia nigra
nTPM: 36.7
2590 Female, age 75, unknown 50.6
2583 Male, age 75, right hemisphere 49.0
1889 Female, age 72, unknown 40.8
1851 Male, age 51, unknown 39.2
2409 Female, age 72, unknown 35.8
1941 Male, age 53, unknown 32.2
2699 Male, age 18, unknown 31.9
1916 Female, age 42, unknown 30.9
2665 Male, age 74, both hemispheres 29.7
2241 Male, age 72, unknown 27.3
Superior colliculus
nTPM: 43.3
1913 Female, age 42, unknown 60.9
1995 Male, age 72, unknown 57.2
2668 Female, age 75, unknown 53.8
1895 Male, age 76, right hemisphere 44.4
1839 Male, age 51, unknown 44.0
2587 Male, age 74, left hemisphere 42.2
2664 Male, age 75, both hemispheres 37.2
1796 Male, age 53, unknown 36.4
2261 Male, age 18, unknown 29.6
2087 Female, age 72, unknown 27.5
Ventral tegmental area
nTPM: 42.3
2223 Female, age 72, unknown 58.7
2410 Female, age 72, unknown 45.0
1942 Male, age 51, unknown 40.3
2021 Male, age 53, unknown 37.9
1915 Female, age 42, unknown 36.5
2218 Male, age 76, both hemispheres 35.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.5
Samples: 139

Max nTPM: 316.7
Min nTPM: 13.8
Std nTPM: 42.7
Median nTPM: 53.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 316.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 257.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 191.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 176.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 151.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 149.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 142.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 139.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 137.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 128.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 120.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 127.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 127.5
FF:10158-103A5 76 years, female 127.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.7
Pig sample Sample description nTPM
Midbrain
nTPM: 16.7
Samples: 4

Max nTPM: 34.2
Min nTPM: 7.5
Sample A Female 34.2
Sample B Female 16.9
Sample C Male 7.5
Sample D Male 8.3
Periaqueductal gray
nTPM: 10.8
Samples: 3

Max nTPM: 14.3
Min nTPM: 8.7
Sample B Female 14.3
Sample C Male 8.7
Sample D Male 9.5
Substantia nigra
nTPM: 14.2
Samples: 4

Max nTPM: 19.1
Min nTPM: 9.1
Sample A Female 18.4
Sample B Female 9.1
Sample C Male 10.3
Sample D Male 19.1
Superior colliculi
nTPM: 11.7
Samples: 4

Max nTPM: 17.2
Min nTPM: 5.4
Sample A Female 17.2
Sample B Female 5.4
Sample C Male 11.0
Sample D Male 13.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.3
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.9
Sample A Male 1.6
Sample B Male 0.9
Sample C Female 0.9
Sample D Female 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.