HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:32.6 nTPM
HPA:32.6 nTPM
GTEx:12.2 nTPM
FANTOM5:54.3 Scaled Tags Per Million
Pig:56.5 nTPM
Mouse:39.2 nTPM
Allen mouse:3.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 32.6
Sample id Sample description nTPM
Hippocampus
nTPM: 24.2
2529 Female, age 94, left hemisphere 36.5
2148 Female, age 91, left hemisphere 28.0
1898 Male, age 80, left hemisphere 24.0
1911 Female, age 85, right hemisphere 20.4
1855 Male, age 76, left hemisphere 19.8
2621 Female, age 67, right hemisphere 16.4
Dentate gyrus
nTPM: 24.9
2528 Male, age 74, both hemispheres 34.4
2246 Female, age 85, both hemispheres 28.6
2010 Male, age 76, both hemispheres 24.0
2531 Female, age 67, both hemispheres 21.9
2530 Female, age 94, left hemisphere 20.4
1927 Female, age 91, both hemispheres 19.8
Entorhinal gyrus
nTPM: 25.7
1938 Female, age 85, left hemisphere 32.6
2117 Female, age 91, right hemisphere 31.1
2764 Male, age 80, right hemisphere 24.7
1787 Male, age 76, left hemisphere 24.1
2686 Male, age 75, right hemisphere 23.5
2613 Female, age 94, left hemisphere 18.3
Hippocampus, CA1
nTPM: 25.8
2082 Female, age 91, right hemisphere 31.3
1873 Female, age 85, both hemispheres 29.9
2527 Male, age 74, both hemispheres 29.1
2045 Male, age 76, both hemispheres 20.1
2749 Male, age 80, left hemisphere 18.8
Hippocampus, CA2
nTPM: 24.6
2113 Female, age 91, right hemisphere 30.2
2249 Male, age 74, both hemispheres 28.4
1963 Male, age 80, left hemisphere 25.3
1892 Male, age 76, both hemispheres 22.5
2437 Female, age 94, left hemisphere 21.5
1940 Female, age 85, left hemisphere 19.6
Hippocampus, CA3
nTPM: 18.9
2861 Female, age 67, both hemispheres 22.2
1891 Female, age 85, both hemispheres 21.4
2436 Male, age 74, both hemispheres 21.1
2620 Female, age 94, left hemisphere 18.9
1867 Male, age 76, both hemispheres 16.7
2137 Male, age 80, left hemisphere 13.3
Parahippocampal cortex
nTPM: 25.8
1850 Male, age 80, both hemispheres 31.4
1933 Female, age 85, both hemispheres 28.9
2692 Male, age 74, both hemispheres 26.8
2622 Female, age 67, right hemisphere 26.1
2250 Female, age 67, right hemisphere 25.7
2245 Female, age 91, both hemispheres 25.4
2693 Female, age 94, both hemispheres 25.4
2532 Female, age 72, left hemisphere 24.1
1990 Female, age 91, right hemisphere 23.9
2018 Male, age 76, both hemispheres 20.5
Perirhinal gyrus
nTPM: 32.6
1794 Male, age 80, right hemisphere 38.5
1847 Female, age 91, left hemisphere 36.6
1841 Female, age 85, right hemisphere 34.7
2521 Female, age 94, right hemisphere 30.2
2848 Male, age 76, right hemisphere 23.1
Subiculum
nTPM: 23.0
2729 Female, age 91, right hemisphere 34.3
1977 Female, age 85, both hemispheres 29.3
2619 Male, age 74, both hemispheres 27.1
2438 Female, age 94, left hemisphere 22.2
2042 Male, age 76, both hemispheres 12.9
1901 Male, age 80, both hemispheres 12.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.2
Samples: 197

Max nTPM: 23.4
Min nTPM: 5.1
Std nTPM: 3.7
Median nTPM: 11.5
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 23.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 22.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 21.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 20.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 20.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 20.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 19.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 19.8
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 19.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 19.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 19.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 54.3
FF:10153-102I9 76 years, female 72.1
FF:10169-103B7 60 years, female 36.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 56.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 36.2
Samples: 4

Max nTPM: 38.1
Min nTPM: 33.4
Sample A Female 38.1
Sample B Female 35.5
Sample C Male 37.8
Sample D Male 33.4
Entorhinal cortex
nTPM: 56.5
Samples: 4

Max nTPM: 59.7
Min nTPM: 52.5
Sample A Female 59.7
Sample B Female 54.3
Sample C Male 59.6
Sample D Male 52.5
Subiculum
nTPM: 52.5
Samples: 4

Max nTPM: 60.7
Min nTPM: 45.8
Sample A Female 60.7
Sample B Female 52.8
Sample C Male 45.8
Sample D Male 50.8
Ventral hippocampus
nTPM: 35.4
Samples: 4

Max nTPM: 39.1
Min nTPM: 32.1
Sample A Female 32.1
Sample B Female 37.9
Sample C Male 32.5
Sample D Male 39.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 39.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 39.2
Samples: 4

Max nTPM: 45.8
Min nTPM: 35.2
Sample A Male 37.1
Sample B Male 38.6
Sample C Female 35.2
Sample D Female 45.8
Hippocampal formation
nTPM: 22.6
Samples: 4

Max nTPM: 26.1
Min nTPM: 20.6
Sample A Male 26.1
Sample B Male 20.9
Sample C Female 20.6
Sample D Female 22.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.8
69873594 Antisense, RP_050512_01_E12, Mouse strain C57BL/6J (56 days, male) 7.5
71158349 Antisense, RP_050810_01_F12, Mouse strain C57BL/6J (56 days, male) 0.0

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