MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:177.2 nTPM
HPA:177.2 nTPM
GTEx:141.0 nTPM
FANTOM5:113.8 Scaled Tags Per Million
Pig:82.1 nTPM
Mouse:114.2 nTPM
Allen mouse:3.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 177.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 171.1
2586 Male, age 75, left hemisphere 190.0
2828 Female, age 72, unknown 176.4
2666 Male, age 74, left hemisphere 172.0
1833 Male, age 53, unknown 170.2
2411 Female, age 72, unknown 169.6
2019 Male, age 18, unknown 168.9
1830 Male, age 51, unknown 168.2
1870 Female, age 42, unknown 167.6
1827 Male, age 72, unknown 167.0
2219 Male, age 76, both hemispheres 161.3
Dorsal raphe nucleus
nTPM: 168.6
1828 Male, age 53, unknown 173.0
2047 Male, age 72, unknown 171.8
2750 Male, age 76, both hemispheres 169.4
2016 Female, age 72, unknown 164.9
2298 Female, age 72, unknown 164.1
Inferior colliculus
nTPM: 165.4
2849 Male, age 72, unknown 167.2
1848 Female, age 42, unknown 165.6
1890 Male, age 53, unknown 165.5
2097 Female, age 72, unknown 163.4
Median raphe nucleus
nTPM: 167.5
2220 Male, age 76, midline 167.5
Pedunculopontine tegmental nucleus
nTPM: 167.1
2334 Male, age 80, both hemispheres 170.8
2338 Male, age 61, both hemispheres 166.7
1921 Female, age 85, both hemispheres 163.9
Periaquaductal grey, anterior
nTPM: 166.3
2502 Female, age 75, unknown 168.5
1795 Male, age 51, unknown 166.2
1947 Male, age 18, unknown 164.3
Periaquaductal grey, dorsal
nTPM: 163.2
1840 Male, age 53, unknown 164.9
1831 Male, age 72, unknown 163.1
2464 Female, age 72, unknown 162.9
2850 Male, age 76, both hemispheres 162.0
Periaquaductal grey, lateral
nTPM: 160.4
2053 Male, age 18, unknown 163.9
2140 Male, age 76, both hemispheres 160.1
2272 Male, age 74, both hemispheres 157.3
Pretectal area
nTPM: 166.5
1817 Female, age 42, unknown 175.7
1815 Male, age 53, unknown 172.0
2007 Male, age 72, unknown 170.3
2407 Male, age 75, both hemispheres 168.5
1816 Male, age 51, unknown 168.0
2667 Female, age 75, unknown 166.9
1944 Female, age 72, unknown 166.2
2825 Male, age 18, unknown 166.1
2316 Male, age 76, right hemisphere 160.9
2273 Male, age 74, both hemispheres 159.3
2224 Female, age 72, unknown 157.4
Red nucleus
nTPM: 173.2
2588 Male, age 74, left hemisphere 176.2
2769 Male, age 72, unknown 176.1
1821 Female, age 72, unknown 175.8
2584 Male, age 75, left hemisphere 175.4
2227 Male, age 72, unknown 173.9
2503 Female, age 72, unknown 173.8
1954 Female, age 42, unknown 172.3
1865 Male, age 51, unknown 172.0
2785 Male, age 18, unknown 171.9
2823 Male, age 76, right hemisphere 171.6
1904 Male, age 53, unknown 171.5
2725 Female, age 75, unknown 167.5
Substantia nigra
nTPM: 177.2
1916 Female, age 42, unknown 192.5
1851 Male, age 51, unknown 184.9
2665 Male, age 74, both hemispheres 182.3
2699 Male, age 18, unknown 181.3
2583 Male, age 75, right hemisphere 179.5
2409 Female, age 72, unknown 172.5
2590 Female, age 75, unknown 171.5
1889 Female, age 72, unknown 170.0
2241 Male, age 72, unknown 169.1
1941 Male, age 53, unknown 167.9
Superior colliculus
nTPM: 169.0
2664 Male, age 75, both hemispheres 179.5
2668 Female, age 75, unknown 176.5
2587 Male, age 74, left hemisphere 168.9
1839 Male, age 51, unknown 168.3
1796 Male, age 53, unknown 168.1
1995 Male, age 72, unknown 167.0
2261 Male, age 18, unknown 166.1
2087 Female, age 72, unknown 165.7
1913 Female, age 42, unknown 165.3
1895 Male, age 76, right hemisphere 164.7
Ventral tegmental area
nTPM: 173.5
1915 Female, age 42, unknown 177.7
2410 Female, age 72, unknown 177.6
2218 Male, age 76, both hemispheres 175.4
2021 Male, age 53, unknown 172.2
2223 Female, age 72, unknown 169.4
1942 Male, age 51, unknown 168.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 141.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 141.0
Samples: 139

Max nTPM: 266.2
Min nTPM: 81.9
Std nTPM: 30.7
Median nTPM: 136.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 266.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 246.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 236.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 225.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 203.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 200.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 188.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 185.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 185.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 184.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 183.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 113.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 113.8
FF:10158-103A5 76 years, female 113.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 82.1
Pig sample Sample description nTPM
Midbrain
nTPM: 78.4
Samples: 4

Max nTPM: 85.3
Min nTPM: 71.4
Sample A Female 85.3
Sample B Female 71.4
Sample C Male 83.9
Sample D Male 73.0
Periaqueductal gray
nTPM: 63.4
Samples: 3

Max nTPM: 70.9
Min nTPM: 55.7
Sample B Female 63.6
Sample C Male 70.9
Sample D Male 55.7
Substantia nigra
nTPM: 73.4
Samples: 4

Max nTPM: 91.5
Min nTPM: 60.1
Sample A Female 91.5
Sample B Female 60.1
Sample C Male 76.9
Sample D Male 64.9
Superior colliculi
nTPM: 82.1
Samples: 4

Max nTPM: 96.8
Min nTPM: 63.6
Sample A Female 96.8
Sample B Female 63.6
Sample C Male 86.4
Sample D Male 81.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 114.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.2
Samples: 4

Max nTPM: 121.6
Min nTPM: 107.9
Sample A Male 121.6
Sample B Male 109.4
Sample C Female 107.9
Sample D Female 117.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.7
72283773 Antisense, RP_051019_02_B04, Mouse strain C57BL/6J (56 days, male) 6.8
74736207 Antisense, RP_060302_02_E06, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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