MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:26.6 nTPM
HPA:26.6 nTPM
GTEx:24.0 nTPM
FANTOM5:38.7 Scaled Tags Per Million
Pig:30.9 nTPM
Mouse:35.2 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.9
2586 Male, age 75, left hemisphere 29.8
2219 Male, age 76, both hemispheres 26.3
2019 Male, age 18, unknown 24.9
2828 Female, age 72, unknown 23.3
1827 Male, age 72, unknown 23.1
2666 Male, age 74, left hemisphere 20.9
1833 Male, age 53, unknown 20.5
1870 Female, age 42, unknown 20.5
1830 Male, age 51, unknown 20.4
2411 Female, age 72, unknown 19.3
Dorsal raphe nucleus
nTPM: 21.8
2298 Female, age 72, unknown 24.3
2750 Male, age 76, both hemispheres 22.9
2047 Male, age 72, unknown 22.5
1828 Male, age 53, unknown 20.6
2016 Female, age 72, unknown 18.9
Inferior colliculus
nTPM: 22.2
2097 Female, age 72, unknown 25.8
1890 Male, age 53, unknown 22.0
2849 Male, age 72, unknown 21.0
1848 Female, age 42, unknown 20.2
Median raphe nucleus
nTPM: 22.6
2220 Male, age 76, midline 22.6
Pedunculopontine tegmental nucleus
nTPM: 20.2
1921 Female, age 85, both hemispheres 21.4
2334 Male, age 80, both hemispheres 21.4
2338 Male, age 61, both hemispheres 17.8
Periaquaductal grey, anterior
nTPM: 23.1
1795 Male, age 51, unknown 24.7
2502 Female, age 75, unknown 23.4
1947 Male, age 18, unknown 21.2
Periaquaductal grey, dorsal
nTPM: 20.3
1831 Male, age 72, unknown 21.9
1840 Male, age 53, unknown 20.7
2464 Female, age 72, unknown 19.3
2850 Male, age 76, both hemispheres 19.3
Periaquaductal grey, lateral
nTPM: 21.7
2272 Male, age 74, both hemispheres 23.5
2140 Male, age 76, both hemispheres 21.9
2053 Male, age 18, unknown 19.9
Pretectal area
nTPM: 26.6
1816 Male, age 51, unknown 33.5
1944 Female, age 72, unknown 31.0
2007 Male, age 72, unknown 30.5
1817 Female, age 42, unknown 29.4
2667 Female, age 75, unknown 27.6
1815 Male, age 53, unknown 26.7
2407 Male, age 75, both hemispheres 26.5
2273 Male, age 74, both hemispheres 23.9
2316 Male, age 76, right hemisphere 21.2
2224 Female, age 72, unknown 21.1
2825 Male, age 18, unknown 21.1
Red nucleus
nTPM: 21.8
2785 Male, age 18, unknown 27.2
2584 Male, age 75, left hemisphere 24.8
2588 Male, age 74, left hemisphere 24.5
2503 Female, age 72, unknown 22.2
2227 Male, age 72, unknown 21.8
2725 Female, age 75, unknown 21.1
1904 Male, age 53, unknown 20.5
2769 Male, age 72, unknown 20.4
1954 Female, age 42, unknown 20.2
1821 Female, age 72, unknown 20.1
1865 Male, age 51, unknown 19.6
2823 Male, age 76, right hemisphere 19.5
Substantia nigra
nTPM: 23.6
1941 Male, age 53, unknown 26.7
1889 Female, age 72, unknown 25.8
2583 Male, age 75, right hemisphere 24.9
1916 Female, age 42, unknown 24.5
2665 Male, age 74, both hemispheres 23.9
1851 Male, age 51, unknown 23.6
2590 Female, age 75, unknown 23.5
2241 Male, age 72, unknown 21.4
2699 Male, age 18, unknown 21.0
2409 Female, age 72, unknown 20.3
Superior colliculus
nTPM: 24.0
2261 Male, age 18, unknown 28.7
2087 Female, age 72, unknown 28.1
1796 Male, age 53, unknown 26.0
2664 Male, age 75, both hemispheres 25.0
2668 Female, age 75, unknown 23.1
1913 Female, age 42, unknown 22.5
1995 Male, age 72, unknown 22.3
1895 Male, age 76, right hemisphere 22.2
2587 Male, age 74, left hemisphere 21.5
1839 Male, age 51, unknown 20.8
Ventral tegmental area
nTPM: 22.2
1915 Female, age 42, unknown 23.1
1942 Male, age 51, unknown 22.7
2410 Female, age 72, unknown 22.7
2218 Male, age 76, both hemispheres 22.2
2021 Male, age 53, unknown 21.4
2223 Female, age 72, unknown 21.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.0
Samples: 139

Max nTPM: 49.8
Min nTPM: 15.3
Std nTPM: 4.7
Median nTPM: 23.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 49.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 44.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 35.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 33.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 33.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 33.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 33.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 31.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 30.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 30.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 30.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.7
FF:10158-103A5 76 years, female 38.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.9
Pig sample Sample description nTPM
Midbrain
nTPM: 30.9
Samples: 4

Max nTPM: 37.6
Min nTPM: 24.4
Sample A Female 31.0
Sample B Female 24.4
Sample C Male 37.6
Sample D Male 30.5
Periaqueductal gray
nTPM: 25.6
Samples: 3

Max nTPM: 29.6
Min nTPM: 23.4
Sample B Female 23.4
Sample C Male 29.6
Sample D Male 23.7
Substantia nigra
nTPM: 28.6
Samples: 4

Max nTPM: 33.2
Min nTPM: 24.0
Sample A Female 32.2
Sample B Female 24.8
Sample C Male 33.2
Sample D Male 24.0
Superior colliculi
nTPM: 29.4
Samples: 4

Max nTPM: 34.4
Min nTPM: 23.6
Sample A Female 30.5
Sample B Female 23.6
Sample C Male 34.4
Sample D Male 28.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.2
Samples: 4

Max nTPM: 35.7
Min nTPM: 34.9
Sample A Male 35.7
Sample B Male 35.0
Sample C Female 34.9
Sample D Female 35.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71495944 Antisense, RP_050913_03_H05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.