MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:74.7 nTPM
HPA:74.7 nTPM
GTEx:54.9 nTPM
FANTOM5:80.7 Scaled Tags Per Million
Pig:25.5 nTPM
Mouse:210.1 nTPM
Allen mouse:10.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 74.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.9
2411 Female, age 72, unknown 77.4
1870 Female, age 42, unknown 70.9
1827 Male, age 72, unknown 69.3
2219 Male, age 76, both hemispheres 67.5
1833 Male, age 53, unknown 67.1
2019 Male, age 18, unknown 67.0
1830 Male, age 51, unknown 64.0
2828 Female, age 72, unknown 63.8
2666 Male, age 74, left hemisphere 63.1
2586 Male, age 75, left hemisphere 59.2
Dorsal raphe nucleus
nTPM: 71.3
2298 Female, age 72, unknown 78.2
2047 Male, age 72, unknown 72.3
2750 Male, age 76, both hemispheres 71.1
1828 Male, age 53, unknown 69.3
2016 Female, age 72, unknown 65.3
Inferior colliculus
nTPM: 66.3
2097 Female, age 72, unknown 67.5
1848 Female, age 42, unknown 66.8
1890 Male, age 53, unknown 66.4
2849 Male, age 72, unknown 64.5
Median raphe nucleus
nTPM: 74.7
2220 Male, age 76, midline 74.7
Pedunculopontine tegmental nucleus
nTPM: 71.4
2334 Male, age 80, both hemispheres 72.8
1921 Female, age 85, both hemispheres 72.4
2338 Male, age 61, both hemispheres 68.9
Periaquaductal grey, anterior
nTPM: 66.9
1947 Male, age 18, unknown 68.9
1795 Male, age 51, unknown 66.1
2502 Female, age 75, unknown 65.7
Periaquaductal grey, dorsal
nTPM: 66.0
1840 Male, age 53, unknown 68.0
2850 Male, age 76, both hemispheres 67.2
2464 Female, age 72, unknown 65.1
1831 Male, age 72, unknown 63.8
Periaquaductal grey, lateral
nTPM: 68.7
2272 Male, age 74, both hemispheres 75.3
2140 Male, age 76, both hemispheres 66.4
2053 Male, age 18, unknown 64.3
Pretectal area
nTPM: 67.2
2224 Female, age 72, unknown 73.8
2273 Male, age 74, both hemispheres 71.3
1816 Male, age 51, unknown 68.9
1944 Female, age 72, unknown 68.7
2667 Female, age 75, unknown 68.1
2007 Male, age 72, unknown 66.9
2825 Male, age 18, unknown 66.8
1817 Female, age 42, unknown 66.7
1815 Male, age 53, unknown 65.1
2316 Male, age 76, right hemisphere 63.6
2407 Male, age 75, both hemispheres 59.3
Red nucleus
nTPM: 66.3
1821 Female, age 72, unknown 72.7
2725 Female, age 75, unknown 69.8
1954 Female, age 42, unknown 68.9
1904 Male, age 53, unknown 67.8
1865 Male, age 51, unknown 67.3
2503 Female, age 72, unknown 66.9
2785 Male, age 18, unknown 65.6
2823 Male, age 76, right hemisphere 64.9
2227 Male, age 72, unknown 64.6
2769 Male, age 72, unknown 64.3
2588 Male, age 74, left hemisphere 63.6
2584 Male, age 75, left hemisphere 59.0
Substantia nigra
nTPM: 71.8
2241 Male, age 72, unknown 83.5
1916 Female, age 42, unknown 81.3
1851 Male, age 51, unknown 75.1
2409 Female, age 72, unknown 73.9
1941 Male, age 53, unknown 71.0
2699 Male, age 18, unknown 70.9
1889 Female, age 72, unknown 70.0
2665 Male, age 74, both hemispheres 66.8
2590 Female, age 75, unknown 65.1
2583 Male, age 75, right hemisphere 61.0
Superior colliculus
nTPM: 64.1
1796 Male, age 53, unknown 67.8
2587 Male, age 74, left hemisphere 67.7
2261 Male, age 18, unknown 65.8
2668 Female, age 75, unknown 65.6
1895 Male, age 76, right hemisphere 65.5
2087 Female, age 72, unknown 65.1
1839 Male, age 51, unknown 64.4
1913 Female, age 42, unknown 63.5
1995 Male, age 72, unknown 59.9
2664 Male, age 75, both hemispheres 55.6
Ventral tegmental area
nTPM: 72.4
2410 Female, age 72, unknown 81.8
2218 Male, age 76, both hemispheres 75.0
1915 Female, age 42, unknown 74.2
2223 Female, age 72, unknown 69.4
1942 Male, age 51, unknown 67.9
2021 Male, age 53, unknown 65.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.9
Samples: 139

Max nTPM: 150.5
Min nTPM: 26.9
Std nTPM: 19.5
Median nTPM: 50.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 150.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 114.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 102.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 101.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 99.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 97.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 96.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 93.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 92.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 92.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 87.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 80.7
FF:10158-103A5 76 years, female 80.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.5
Pig sample Sample description nTPM
Midbrain
nTPM: 23.7
Samples: 4

Max nTPM: 33.9
Min nTPM: 17.9
Sample A Female 33.9
Sample B Female 20.9
Sample C Male 22.1
Sample D Male 17.9
Periaqueductal gray
nTPM: 20.4
Samples: 3

Max nTPM: 24.2
Min nTPM: 17.1
Sample B Female 20.0
Sample C Male 24.2
Sample D Male 17.1
Substantia nigra
nTPM: 25.5
Samples: 4

Max nTPM: 31.9
Min nTPM: 19.7
Sample A Female 31.9
Sample B Female 19.7
Sample C Male 29.1
Sample D Male 21.3
Superior colliculi
nTPM: 23.0
Samples: 4

Max nTPM: 25.1
Min nTPM: 21.0
Sample A Female 25.1
Sample B Female 22.0
Sample C Male 23.7
Sample D Male 21.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 210.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 210.1
Samples: 4

Max nTPM: 215.6
Min nTPM: 206.6
Sample A Male 209.7
Sample B Male 208.4
Sample C Female 206.6
Sample D Female 215.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
69540549 Antisense, RP_050426_02_A02, Mouse strain C57BL/6J (56 days, male) 10.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.