HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:8.1 nTPM
HPA:8.1 nTPM
GTEx:10.7 nTPM
FANTOM5:25.5 Scaled Tags Per Million
Pig:58.2 nTPM
Mouse:57.5 nTPM
Allen mouse:10.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040786Antibody CAB003782
Glial cells MediumLow
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 8.1
Sample id Sample description nTPM
Hippocampus
nTPM: 7.0
1898 Male, age 80, left hemisphere 10.0
1911 Female, age 85, right hemisphere 7.1
1855 Male, age 76, left hemisphere 6.9
2529 Female, age 94, left hemisphere 6.9
2621 Female, age 67, right hemisphere 5.6
2148 Female, age 91, left hemisphere 5.4
Dentate gyrus
nTPM: 7.0
1927 Female, age 91, both hemispheres 8.2
2010 Male, age 76, both hemispheres 8.0
2528 Male, age 74, both hemispheres 7.3
2246 Female, age 85, both hemispheres 6.6
2530 Female, age 94, left hemisphere 6.4
2531 Female, age 67, both hemispheres 5.5
Entorhinal gyrus
nTPM: 6.8
1938 Female, age 85, left hemisphere 8.3
1787 Male, age 76, left hemisphere 7.0
2117 Female, age 91, right hemisphere 6.6
2764 Male, age 80, right hemisphere 6.6
2686 Male, age 75, right hemisphere 6.3
2613 Female, age 94, left hemisphere 6.0
Hippocampus, CA1
nTPM: 7.9
2749 Male, age 80, left hemisphere 10.9
1873 Female, age 85, both hemispheres 8.4
2527 Male, age 74, both hemispheres 7.3
2082 Female, age 91, right hemisphere 6.8
2045 Male, age 76, both hemispheres 6.1
Hippocampus, CA2
nTPM: 7.6
1892 Male, age 76, both hemispheres 10.4
1963 Male, age 80, left hemisphere 9.2
2249 Male, age 74, both hemispheres 7.6
1940 Female, age 85, left hemisphere 6.4
2437 Female, age 94, left hemisphere 6.0
2113 Female, age 91, right hemisphere 5.9
Hippocampus, CA3
nTPM: 7.6
2137 Male, age 80, left hemisphere 10.1
1867 Male, age 76, both hemispheres 9.1
2436 Male, age 74, both hemispheres 7.8
1891 Female, age 85, both hemispheres 6.7
2620 Female, age 94, left hemisphere 6.0
2861 Female, age 67, both hemispheres 5.8
Parahippocampal cortex
nTPM: 7.1
1850 Male, age 80, both hemispheres 8.3
1990 Female, age 91, right hemisphere 8.2
1933 Female, age 85, both hemispheres 8.0
2250 Female, age 67, right hemisphere 7.5
2692 Male, age 74, both hemispheres 7.2
2693 Female, age 94, both hemispheres 7.1
2018 Male, age 76, both hemispheres 6.4
2245 Female, age 91, both hemispheres 6.4
2532 Female, age 72, left hemisphere 6.2
2622 Female, age 67, right hemisphere 5.3
Perirhinal gyrus
nTPM: 8.1
1841 Female, age 85, right hemisphere 8.6
1847 Female, age 91, left hemisphere 8.5
1794 Male, age 80, right hemisphere 8.3
2848 Male, age 76, right hemisphere 7.7
2521 Female, age 94, right hemisphere 7.5
Subiculum
nTPM: 7.1
1901 Male, age 80, both hemispheres 8.6
1977 Female, age 85, both hemispheres 7.5
2438 Female, age 94, left hemisphere 7.3
2619 Male, age 74, both hemispheres 6.7
2729 Female, age 91, right hemisphere 6.6
2042 Male, age 76, both hemispheres 5.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.7
Samples: 197

Max nTPM: 21.2
Min nTPM: 5.1
Std nTPM: 2.9
Median nTPM: 10.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 21.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 19.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 19.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 18.1
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 17.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 17.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 16.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 16.8
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 16.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 16.3
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 16.1
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 25.5
FF:10169-103B7 60 years, female 29.2
FF:10153-102I9 76 years, female 21.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 58.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 58.2
Samples: 4

Max nTPM: 74.2
Min nTPM: 49.6
Sample A Female 74.2
Sample B Female 56.7
Sample C Male 52.4
Sample D Male 49.6
Entorhinal cortex
nTPM: 46.4
Samples: 4

Max nTPM: 51.7
Min nTPM: 42.8
Sample A Female 51.7
Sample B Female 47.0
Sample C Male 44.0
Sample D Male 42.8
Subiculum
nTPM: 51.2
Samples: 4

Max nTPM: 62.4
Min nTPM: 44.0
Sample A Female 62.4
Sample B Female 45.2
Sample C Male 53.1
Sample D Male 44.0
Ventral hippocampus
nTPM: 56.8
Samples: 4

Max nTPM: 64.5
Min nTPM: 41.0
Sample A Female 64.5
Sample B Female 41.0
Sample C Male 62.1
Sample D Male 59.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 57.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 45.2
Samples: 4

Max nTPM: 46.9
Min nTPM: 43.9
Sample A Male 44.3
Sample B Male 43.9
Sample C Female 45.6
Sample D Female 46.9
Hippocampal formation
nTPM: 57.6
Samples: 4

Max nTPM: 65.9
Min nTPM: 52.2
Sample A Male 52.9
Sample B Male 59.2
Sample C Female 65.9
Sample D Female 52.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.6
67767460 Antisense, RP_040916_02_A10, Mouse strain C57BL/6J (56 days, male) 14.8
70743896 Antisense, RP_050725_02_A02, Mouse strain C57BL/6J (56 days, male) 6.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.