MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:6.7 nTPM
HPA:6.7 nTPM
GTEx:10.5 nTPM
FANTOM5:20.8 Scaled Tags Per Million
Pig:16.0 nTPM
Mouse:0.7 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 6.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.0
2219 Male, age 76, both hemispheres 10.7
1833 Male, age 53, unknown 7.0
1830 Male, age 51, unknown 6.6
1827 Male, age 72, unknown 5.8
2411 Female, age 72, unknown 5.2
2828 Female, age 72, unknown 4.4
2666 Male, age 74, left hemisphere 4.1
2019 Male, age 18, unknown 3.4
1870 Female, age 42, unknown 2.3
2586 Male, age 75, left hemisphere 0.5
Dorsal raphe nucleus
nTPM: 4.1
2047 Male, age 72, unknown 6.0
2016 Female, age 72, unknown 5.0
2750 Male, age 76, both hemispheres 5.0
2298 Female, age 72, unknown 2.4
1828 Male, age 53, unknown 2.3
Inferior colliculus
nTPM: 5.9
2849 Male, age 72, unknown 8.0
1890 Male, age 53, unknown 5.4
1848 Female, age 42, unknown 5.3
2097 Female, age 72, unknown 5.0
Median raphe nucleus
nTPM: 5.1
2220 Male, age 76, midline 5.1
Pedunculopontine tegmental nucleus
nTPM: 5.8
1921 Female, age 85, both hemispheres 6.4
2334 Male, age 80, both hemispheres 5.6
2338 Male, age 61, both hemispheres 5.6
Periaquaductal grey, anterior
nTPM: 3.2
1947 Male, age 18, unknown 5.7
1795 Male, age 51, unknown 3.2
2502 Female, age 75, unknown 0.8
Periaquaductal grey, dorsal
nTPM: 6.7
1840 Male, age 53, unknown 6.9
1831 Male, age 72, unknown 6.8
2850 Male, age 76, both hemispheres 6.7
2464 Female, age 72, unknown 6.4
Periaquaductal grey, lateral
nTPM: 6.4
2140 Male, age 76, both hemispheres 7.9
2272 Male, age 74, both hemispheres 7.0
2053 Male, age 18, unknown 4.4
Pretectal area
nTPM: 5.3
2825 Male, age 18, unknown 7.1
2273 Male, age 74, both hemispheres 7.0
2316 Male, age 76, right hemisphere 6.7
2407 Male, age 75, both hemispheres 6.7
1944 Female, age 72, unknown 6.6
2667 Female, age 75, unknown 6.0
2224 Female, age 72, unknown 5.8
1816 Male, age 51, unknown 4.0
1815 Male, age 53, unknown 3.2
2007 Male, age 72, unknown 3.1
1817 Female, age 42, unknown 2.0
Red nucleus
nTPM: 3.9
2823 Male, age 76, right hemisphere 7.1
2725 Female, age 75, unknown 5.6
2503 Female, age 72, unknown 4.9
2588 Male, age 74, left hemisphere 4.9
1954 Female, age 42, unknown 4.2
2584 Male, age 75, left hemisphere 3.8
1904 Male, age 53, unknown 3.3
2227 Male, age 72, unknown 3.2
1865 Male, age 51, unknown 3.1
2785 Male, age 18, unknown 2.4
2769 Male, age 72, unknown 2.0
1821 Female, age 72, unknown 1.7
Substantia nigra
nTPM: 5.4
1941 Male, age 53, unknown 8.7
2241 Male, age 72, unknown 6.7
2590 Female, age 75, unknown 6.5
2699 Male, age 18, unknown 5.9
2583 Male, age 75, right hemisphere 5.6
1916 Female, age 42, unknown 5.1
2409 Female, age 72, unknown 5.1
1851 Male, age 51, unknown 3.9
1889 Female, age 72, unknown 3.2
2665 Male, age 74, both hemispheres 3.0
Superior colliculus
nTPM: 4.8
1895 Male, age 76, right hemisphere 9.2
2087 Female, age 72, unknown 7.1
1839 Male, age 51, unknown 5.1
2261 Male, age 18, unknown 4.8
2587 Male, age 74, left hemisphere 4.0
2668 Female, age 75, unknown 3.8
2664 Male, age 75, both hemispheres 3.7
1913 Female, age 42, unknown 3.6
1995 Male, age 72, unknown 3.4
1796 Male, age 53, unknown 3.3
Ventral tegmental area
nTPM: 5.1
2218 Male, age 76, both hemispheres 6.6
2021 Male, age 53, unknown 6.2
1942 Male, age 51, unknown 6.1
2410 Female, age 72, unknown 4.1
1915 Female, age 42, unknown 3.9
2223 Female, age 72, unknown 3.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.5
Samples: 139

Max nTPM: 25.8
Min nTPM: 3.0
Std nTPM: 3.8
Median nTPM: 10.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 25.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 24.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 20.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 17.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 17.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 17.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 16.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 16.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 16.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 16.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 16.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.8
FF:10158-103A5 76 years, female 20.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.0
Pig sample Sample description nTPM
Midbrain
nTPM: 16.0
Samples: 4

Max nTPM: 20.0
Min nTPM: 13.2
Sample A Female 20.0
Sample B Female 16.3
Sample C Male 14.3
Sample D Male 13.2
Periaqueductal gray
nTPM: 12.8
Samples: 3

Max nTPM: 13.2
Min nTPM: 12.2
Sample B Female 13.0
Sample C Male 13.2
Sample D Male 12.2
Substantia nigra
nTPM: 16.0
Samples: 4

Max nTPM: 17.5
Min nTPM: 14.5
Sample A Female 17.5
Sample B Female 14.8
Sample C Male 17.2
Sample D Male 14.5
Superior colliculi
nTPM: 14.7
Samples: 4

Max nTPM: 16.5
Min nTPM: 13.0
Sample A Female 16.5
Sample B Female 13.7
Sample C Male 15.6
Sample D Male 13.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.7
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.6
Sample A Male 0.6
Sample B Male 0.7
Sample C Female 0.7
Sample D Female 0.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
74743489 Antisense, RP_060306_03_B09, Mouse strain C57BL/6J (56 days, male) 6.8
74427106 Antisense, RP_051212_01_F02, Mouse strain C57BL/6J (56 days, male) 0.3
69608435 Antisense, RP_050426_04_B01, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.