MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:15.3 nTPM
HPA:15.3 nTPM
GTEx:9.6 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Pig:17.0 nTPM
Mouse:46.1 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.9
1830 Male, age 51, unknown 15.3
1870 Female, age 42, unknown 15.3
2219 Male, age 76, both hemispheres 15.3
2019 Male, age 18, unknown 15.2
1833 Male, age 53, unknown 15.1
2411 Female, age 72, unknown 15.1
1827 Male, age 72, unknown 14.9
2828 Female, age 72, unknown 14.4
2586 Male, age 75, left hemisphere 14.3
2666 Male, age 74, left hemisphere 14.3
Dorsal raphe nucleus
nTPM: 14.7
1828 Male, age 53, unknown 15.0
2016 Female, age 72, unknown 15.0
2750 Male, age 76, both hemispheres 14.8
2047 Male, age 72, unknown 14.7
2298 Female, age 72, unknown 14.2
Inferior colliculus
nTPM: 14.8
2849 Male, age 72, unknown 15.0
1848 Female, age 42, unknown 14.9
2097 Female, age 72, unknown 14.9
1890 Male, age 53, unknown 14.3
Median raphe nucleus
nTPM: 15.2
2220 Male, age 76, midline 15.2
Pedunculopontine tegmental nucleus
nTPM: 15.3
2338 Male, age 61, both hemispheres 16.1
2334 Male, age 80, both hemispheres 15.0
1921 Female, age 85, both hemispheres 14.7
Periaquaductal grey, anterior
nTPM: 14.5
1947 Male, age 18, unknown 14.7
2502 Female, age 75, unknown 14.4
1795 Male, age 51, unknown 14.2
Periaquaductal grey, dorsal
nTPM: 14.4
1840 Male, age 53, unknown 15.1
2464 Female, age 72, unknown 14.5
1831 Male, age 72, unknown 14.0
2850 Male, age 76, both hemispheres 14.0
Periaquaductal grey, lateral
nTPM: 14.8
2272 Male, age 74, both hemispheres 15.0
2053 Male, age 18, unknown 14.7
2140 Male, age 76, both hemispheres 14.6
Pretectal area
nTPM: 14.7
2667 Female, age 75, unknown 15.4
1817 Female, age 42, unknown 15.1
1815 Male, age 53, unknown 14.8
2273 Male, age 74, both hemispheres 14.8
1816 Male, age 51, unknown 14.7
2007 Male, age 72, unknown 14.7
2224 Female, age 72, unknown 14.7
1944 Female, age 72, unknown 14.6
2407 Male, age 75, both hemispheres 14.5
2825 Male, age 18, unknown 14.4
2316 Male, age 76, right hemisphere 14.3
Red nucleus
nTPM: 15.1
1865 Male, age 51, unknown 15.7
1954 Female, age 42, unknown 15.7
1904 Male, age 53, unknown 15.5
2227 Male, age 72, unknown 15.5
2588 Male, age 74, left hemisphere 15.4
2823 Male, age 76, right hemisphere 15.3
2503 Female, age 72, unknown 15.1
2769 Male, age 72, unknown 15.1
1821 Female, age 72, unknown 14.9
2785 Male, age 18, unknown 14.9
2725 Female, age 75, unknown 14.3
2584 Male, age 75, left hemisphere 13.9
Substantia nigra
nTPM: 14.6
2409 Female, age 72, unknown 15.0
2583 Male, age 75, right hemisphere 14.9
2590 Female, age 75, unknown 14.8
2241 Male, age 72, unknown 14.7
1851 Male, age 51, unknown 14.6
1889 Female, age 72, unknown 14.6
2665 Male, age 74, both hemispheres 14.6
2699 Male, age 18, unknown 14.5
1916 Female, age 42, unknown 14.4
1941 Male, age 53, unknown 14.2
Superior colliculus
nTPM: 14.9
1913 Female, age 42, unknown 15.6
1895 Male, age 76, right hemisphere 15.3
2087 Female, age 72, unknown 15.0
2261 Male, age 18, unknown 15.0
2587 Male, age 74, left hemisphere 15.0
1839 Male, age 51, unknown 14.9
2668 Female, age 75, unknown 14.9
1995 Male, age 72, unknown 14.6
1796 Male, age 53, unknown 14.3
2664 Male, age 75, both hemispheres 14.1
Ventral tegmental area
nTPM: 14.9
2223 Female, age 72, unknown 15.6
1915 Female, age 42, unknown 15.0
2218 Male, age 76, both hemispheres 14.9
2410 Female, age 72, unknown 14.9
2021 Male, age 53, unknown 14.7
1942 Male, age 51, unknown 14.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.6
Samples: 139

Max nTPM: 15.6
Min nTPM: 6.1
Std nTPM: 1.4
Median nTPM: 9.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 15.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 13.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 13.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 13.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 13.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 12.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 12.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 11.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 11.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 11.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 11.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.2
FF:10158-103A5 76 years, female 29.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.0
Pig sample Sample description nTPM
Midbrain
nTPM: 17.0
Samples: 4

Max nTPM: 20.0
Min nTPM: 15.0
Sample A Female 20.0
Sample B Female 15.0
Sample C Male 15.7
Sample D Male 17.2
Periaqueductal gray
nTPM: 16.0
Samples: 3

Max nTPM: 16.5
Min nTPM: 15.1
Sample B Female 15.1
Sample C Male 16.5
Sample D Male 16.3
Substantia nigra
nTPM: 16.4
Samples: 4

Max nTPM: 18.2
Min nTPM: 13.8
Sample A Female 18.2
Sample B Female 13.8
Sample C Male 16.1
Sample D Male 17.3
Superior colliculi
nTPM: 16.6
Samples: 4

Max nTPM: 18.2
Min nTPM: 13.1
Sample A Female 18.2
Sample B Female 13.1
Sample C Male 17.1
Sample D Male 18.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.1
Samples: 4

Max nTPM: 50.2
Min nTPM: 40.6
Sample A Male 40.6
Sample B Male 44.4
Sample C Female 50.2
Sample D Female 49.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
69080004 Antisense, RP_050324_01_C04, Mouse strain C57BL/6J (56 days, male) 4.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.