BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:44.3 nTPM
HPA:44.3 nTPM
GTEx:44.6 nTPM
FANTOM5:89.2 Scaled Tags Per Million
Pig:83.0 nTPM
Mouse:60.3 nTPM
Allen mouse:0.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA037830Antibody HPA057540
Glial cells LowNot detected
Neuronal cells MediumLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.6
1857 Female, age 85, left hemisphere 47.9
2290 Female, age 72, unknown 46.2
2846 Female, age 79, unknown 45.5
1854 Male, age 80, left hemisphere 44.8
2481 Female, age 94, left hemisphere 42.0
1781 Male, age 74, unknown 41.9
2288 Male, age 75, left hemisphere 41.0
2289 Male, age 61, right hemisphere 39.9
Claustrum
nTPM: 38.5
2392 Female, age 94, both hemispheres 40.8
1956 Male, age 74, unknown 40.2
2196 Female, age 79, unknown 40.0
2198 Male, age 80, both hemispheres 39.1
2568 Male, age 61, both hemispheres 38.7
2292 Female, age 85, both hemispheres 37.3
2491 Male, age 75, both hemispheres 37.3
2284 Female, age 91, both hemispheres 37.1
2645 Female, age 72, unknown 36.5
Globus pallidus, externus
nTPM: 37.9
2772 Female, age 79, unknown 42.1
2395 Male, age 75, both hemispheres 41.2
1996 Male, age 80, right hemisphere 39.4
2646 Male, age 61, right hemisphere 34.6
2567 Female, age 72, unknown 32.0
Globus pallidus, internus
nTPM: 39.2
2287 Male, age 75, right hemisphere 44.0
2778 Female, age 91, both hemispheres 41.3
2483 Female, age 94, right hemisphere 40.1
1818 Male, age 74, unknown 39.7
2037 Male, age 80, right hemisphere 39.3
2111 Female, age 85, right hemisphere 35.4
2566 Female, age 72, unknown 34.8
Nucleus accumbens
nTPM: 44.3
1856 Female, age 91, right hemisphere 50.2
1806 Female, age 85, left hemisphere 46.7
2824 Male, age 61, right hemisphere 46.5
1783 Male, age 74, unknown 45.1
2698 Female, age 72, unknown 45.1
2286 Male, age 75, left hemisphere 43.1
2391 Female, age 94, left hemisphere 41.2
2732 Male, age 80, right hemisphere 36.1
Nucleus basalis of Meynert
nTPM: 40.3
2393 Male, age 80, right hemisphere 42.4
2484 Female, age 94, left hemisphere 42.0
2821 Male, age 75, both hemispheres 41.8
2569 Male, age 61, both hemispheres 34.8
Nucleus of the diagonal band
nTPM: 40.7
1812 Female, age 91, both hemispheres 44.7
2775 Male, age 80, right hemisphere 42.2
2029 Male, age 61, right hemisphere 40.3
2195 Female, age 85, both hemispheres 39.5
1979 Male, age 74, unknown 36.7
Olfactory tubercle
nTPM: 39.8
1846 Male, age 80, right hemisphere 43.0
1998 Female, age 91, both hemispheres 41.3
2856 Male, age 75, right hemisphere 37.9
2487 Female, age 94, left hemisphere 37.1
Putamen
nTPM: 41.8
1838 Male, age 80, right hemisphere 48.4
1937 Female, age 91, right hemisphere 45.0
2466 Female, age 79, unknown 43.8
1829 Male, age 74, unknown 43.5
2482 Female, age 94, left hemisphere 41.4
2489 Female, age 72, unknown 35.8
2647 Male, age 75, left hemisphere 34.8
Septal nuclei
nTPM: 39.4
2031 Female, age 72, unknown 43.9
2009 Female, age 91, both hemispheres 40.8
1960 Male, age 74, unknown 39.7
2629 Female, age 94, right hemisphere 38.8
2394 Male, age 61, left hemisphere 37.8
2199 Male, age 80, right hemisphere 37.4
2059 Female, age 85, both hemispheres 37.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.4
Samples: 246

Max nTPM: 85.6
Min nTPM: 21.7
Std nTPM: 10.3
Median nTPM: 40.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 85.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 81.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 71.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 70.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 70.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 63.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 63.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 61.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 61.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 60.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 60.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.6
Samples: 246

Max nTPM: 79.6
Min nTPM: 25.2
Std nTPM: 9.8
Median nTPM: 44.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 79.6
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 76.9
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 68.5
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 68.5
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 66.0
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 64.6
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 64.3
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 62.8
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 61.5
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 61.1
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 60.4
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Brain - Putamen (basal ganglia)
Average nTPM: 41.5
Samples: 205

Max nTPM: 90.3
Min nTPM: 24.9
Std nTPM: 10.1
Median nTPM: 39.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 90.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 69.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 68.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 67.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 65.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 65.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 62.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 62.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 61.7
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 60.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 60.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 64.5
FF:10164-103B2 76 years, female 64.5
Globus pallidus
Scaled Tags Per Million: 51.7
FF:10175-103C4 60 years, female 53.6
FF:10161-103A8 76 years, female 49.8
Nucleus accumbens
Scaled Tags Per Million: 65.3
FF:10037-101F1 23-56 years, mixed 65.3
Putamen
Scaled Tags Per Million: 89.2
FF:10176-103C5 60 years, female 89.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 83.0
Pig sample Sample description nTPM
Caudate
nTPM: 59.7
Samples: 4

Max nTPM: 69.2
Min nTPM: 55.0
Sample A Female 55.0
Sample B Female 58.4
Sample C Male 69.2
Sample D Male 56.2
Putamen
nTPM: 83.0
Samples: 4

Max nTPM: 113.8
Min nTPM: 68.1
Sample A Female 72.5
Sample B Female 68.1
Sample C Male 113.8
Sample D Male 77.4
Septum
nTPM: 63.9
Samples: 4

Max nTPM: 78.5
Min nTPM: 52.5
Sample A Female 67.6
Sample B Female 57.1
Sample C Male 78.5
Sample D Male 52.5
Ventral pallidum
nTPM: 61.7
Samples: 4

Max nTPM: 67.4
Min nTPM: 54.9
Sample A Female 58.2
Sample B Female 66.2
Sample C Male 67.4
Sample D Male 54.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 60.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 60.3
Samples: 4

Max nTPM: 64.6
Min nTPM: 55.6
Sample A Male 55.6
Sample B Male 56.9
Sample C Female 64.6
Sample D Female 64.1
Septum
nTPM: 57.0
Samples: 4

Max nTPM: 64.3
Min nTPM: 52.5
Sample A Male 52.5
Sample B Male 64.3
Sample C Female 56.9
Sample D Female 54.3
Ventral forebrain
nTPM: 56.4
Samples: 4

Max nTPM: 57.9
Min nTPM: 55.2
Sample A Male 55.2
Sample B Male 57.4
Sample C Female 57.9
Sample D Female 55.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
671227 Antisense, RP_040914_01_H01, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.4
671227 Antisense, RP_040914_01_H01, Mouse strain C57BL/6J (56 days, male) 0.4

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