BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:35.2 nTPM
HPA:35.2 nTPM
GTEx:21.6 nTPM
FANTOM5:21.4 Scaled Tags Per Million
Pig:3.4 nTPM
Mouse:8.3 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 35.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 24.0
2846 Female, age 79, unknown 30.1
1781 Male, age 74, unknown 27.0
1857 Female, age 85, left hemisphere 24.0
2288 Male, age 75, left hemisphere 23.6
2290 Female, age 72, unknown 23.6
1854 Male, age 80, left hemisphere 21.6
2289 Male, age 61, right hemisphere 21.5
2481 Female, age 94, left hemisphere 20.3
Claustrum
nTPM: 35.2
2198 Male, age 80, both hemispheres 41.8
2568 Male, age 61, both hemispheres 40.0
2284 Female, age 91, both hemispheres 36.7
2645 Female, age 72, unknown 36.4
2491 Male, age 75, both hemispheres 35.8
2292 Female, age 85, both hemispheres 33.2
2392 Female, age 94, both hemispheres 32.3
1956 Male, age 74, unknown 32.2
2196 Female, age 79, unknown 28.4
Globus pallidus, externus
nTPM: 18.8
2395 Male, age 75, both hemispheres 20.8
1996 Male, age 80, right hemisphere 18.7
2567 Female, age 72, unknown 18.4
2772 Female, age 79, unknown 18.1
2646 Male, age 61, right hemisphere 18.0
Globus pallidus, internus
nTPM: 18.9
2287 Male, age 75, right hemisphere 22.2
2483 Female, age 94, right hemisphere 20.3
1818 Male, age 74, unknown 18.6
2037 Male, age 80, right hemisphere 18.3
2566 Female, age 72, unknown 17.8
2778 Female, age 91, both hemispheres 17.8
2111 Female, age 85, right hemisphere 17.3
Nucleus accumbens
nTPM: 20.6
1783 Male, age 74, unknown 23.2
1806 Female, age 85, left hemisphere 22.2
2286 Male, age 75, left hemisphere 22.1
1856 Female, age 91, right hemisphere 20.7
2824 Male, age 61, right hemisphere 20.6
2698 Female, age 72, unknown 19.7
2391 Female, age 94, left hemisphere 19.0
2732 Male, age 80, right hemisphere 17.2
Nucleus basalis of Meynert
nTPM: 23.0
2393 Male, age 80, right hemisphere 25.7
2484 Female, age 94, left hemisphere 23.9
2821 Male, age 75, both hemispheres 23.7
2569 Male, age 61, both hemispheres 18.8
Nucleus of the diagonal band
nTPM: 32.7
2029 Male, age 61, right hemisphere 39.1
2775 Male, age 80, right hemisphere 37.1
2195 Female, age 85, both hemispheres 37.0
1812 Female, age 91, both hemispheres 32.7
1979 Male, age 74, unknown 17.6
Olfactory tubercle
nTPM: 33.1
1846 Male, age 80, right hemisphere 36.1
1998 Female, age 91, both hemispheres 35.1
2856 Male, age 75, right hemisphere 30.7
2487 Female, age 94, left hemisphere 30.5
Putamen
nTPM: 27.4
2466 Female, age 79, unknown 34.2
2489 Female, age 72, unknown 30.8
2647 Male, age 75, left hemisphere 29.0
1829 Male, age 74, unknown 28.9
1838 Male, age 80, right hemisphere 24.8
2482 Female, age 94, left hemisphere 22.4
1937 Female, age 91, right hemisphere 21.8
Septal nuclei
nTPM: 28.7
1960 Male, age 74, unknown 38.9
2031 Female, age 72, unknown 38.1
2009 Female, age 91, both hemispheres 30.4
2629 Female, age 94, right hemisphere 30.3
2059 Female, age 85, both hemispheres 27.4
2394 Male, age 61, left hemisphere 18.6
2199 Male, age 80, right hemisphere 16.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 21.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 15.9
Samples: 246

Max nTPM: 37.8
Min nTPM: 4.5
Std nTPM: 5.6
Median nTPM: 15.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 37.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 37.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 31.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 29.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 28.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 28.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 27.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 27.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 27.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 27.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 27.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.9
Samples: 246

Max nTPM: 47.4
Min nTPM: 2.0
Std nTPM: 4.8
Median nTPM: 10.1
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 47.4
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 38.3
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 26.8
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 25.6
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 23.9
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 23.0
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 21.8
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 19.6
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 19.2
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 19.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 18.8
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Brain - Putamen (basal ganglia)
Average nTPM: 21.6
Samples: 205

Max nTPM: 40.3
Min nTPM: 5.1
Std nTPM: 7.2
Median nTPM: 21.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 40.3
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 39.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 37.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 37.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 37.3
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 37.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 36.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 36.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 35.3
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 34.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 34.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 14.0
FF:10164-103B2 76 years, female 14.0
Globus pallidus
Scaled Tags Per Million: 12.1
FF:10175-103C4 60 years, female 14.2
FF:10161-103A8 76 years, female 10.1
Nucleus accumbens
Scaled Tags Per Million: 21.4
FF:10037-101F1 23-56 years, mixed 21.4
Putamen
Scaled Tags Per Million: 10.5
FF:10176-103C5 60 years, female 10.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.4
Pig sample Sample description nTPM
Caudate
nTPM: 2.3
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.7
Sample A Female 2.6
Sample B Female 1.7
Sample C Male 2.8
Sample D Male 1.9
Putamen
nTPM: 1.7
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 1.9
Sample C Male 2.0
Sample D Male 1.8
Septum
nTPM: 3.4
Samples: 4

Max nTPM: 7.7
Min nTPM: 0.9
Sample A Female 0.9
Sample B Female 1.2
Sample C Male 3.6
Sample D Male 7.7
Ventral pallidum
nTPM: 1.5
Samples: 4

Max nTPM: 3.0
Min nTPM: 0.7
Sample A Female 0.8
Sample B Female 1.4
Sample C Male 3.0
Sample D Male 0.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 8.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.4
Samples: 4

Max nTPM: 5.0
Min nTPM: 4.0
Sample A Male 4.1
Sample B Male 4.0
Sample C Female 5.0
Sample D Female 4.6
Septum
nTPM: 8.3
Samples: 4

Max nTPM: 9.8
Min nTPM: 5.7
Sample A Male 9.8
Sample B Male 8.6
Sample C Female 9.1
Sample D Female 5.7
Ventral forebrain
nTPM: 5.5
Samples: 4

Max nTPM: 7.2
Min nTPM: 4.4
Sample A Male 5.6
Sample B Male 4.4
Sample C Female 7.2
Sample D Female 4.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
75651160 Antisense, RP_060518_01_A05, Mouse strain C57BL/6J (56 days, male) 0.2
68844056 Antisense, RP_050217_02_G10, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.0
75651160 Antisense, RP_060518_01_A05, Mouse strain C57BL/6J (56 days, male) 0.1
68844056 Antisense, RP_050217_02_G10, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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