MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:48.3 nTPM
HPA:48.3 nTPM
GTEx:47.5 nTPM
FANTOM5:117.7 Scaled Tags Per Million
Pig:34.0 nTPM
Mouse:56.0 nTPM
Allen mouse:6.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.4
2019 Male, age 18, unknown 37.4
2219 Male, age 76, both hemispheres 35.7
2411 Female, age 72, unknown 30.5
2586 Male, age 75, left hemisphere 27.9
1870 Female, age 42, unknown 26.4
1833 Male, age 53, unknown 24.1
2666 Male, age 74, left hemisphere 23.4
1830 Male, age 51, unknown 23.2
2828 Female, age 72, unknown 23.1
1827 Male, age 72, unknown 22.5
Dorsal raphe nucleus
nTPM: 21.8
2750 Male, age 76, both hemispheres 34.3
2047 Male, age 72, unknown 23.3
2298 Female, age 72, unknown 18.7
1828 Male, age 53, unknown 17.5
2016 Female, age 72, unknown 15.3
Inferior colliculus
nTPM: 12.6
1890 Male, age 53, unknown 15.1
1848 Female, age 42, unknown 13.2
2097 Female, age 72, unknown 13.1
2849 Male, age 72, unknown 9.0
Median raphe nucleus
nTPM: 34.0
2220 Male, age 76, midline 34.0
Pedunculopontine tegmental nucleus
nTPM: 23.2
2334 Male, age 80, both hemispheres 28.2
1921 Female, age 85, both hemispheres 23.6
2338 Male, age 61, both hemispheres 17.9
Periaquaductal grey, anterior
nTPM: 22.9
1947 Male, age 18, unknown 26.5
2502 Female, age 75, unknown 21.8
1795 Male, age 51, unknown 20.3
Periaquaductal grey, dorsal
nTPM: 10.7
2464 Female, age 72, unknown 15.0
1831 Male, age 72, unknown 11.3
1840 Male, age 53, unknown 10.2
2850 Male, age 76, both hemispheres 6.5
Periaquaductal grey, lateral
nTPM: 12.9
2272 Male, age 74, both hemispheres 18.4
2053 Male, age 18, unknown 14.3
2140 Male, age 76, both hemispheres 6.0
Pretectal area
nTPM: 24.6
2007 Male, age 72, unknown 38.4
1944 Female, age 72, unknown 36.4
1815 Male, age 53, unknown 34.4
1817 Female, age 42, unknown 34.2
1816 Male, age 51, unknown 32.8
2407 Male, age 75, both hemispheres 20.3
2224 Female, age 72, unknown 18.3
2667 Female, age 75, unknown 17.7
2273 Male, age 74, both hemispheres 15.7
2825 Male, age 18, unknown 12.3
2316 Male, age 76, right hemisphere 10.3
Red nucleus
nTPM: 30.2
1821 Female, age 72, unknown 41.4
1904 Male, age 53, unknown 36.4
2785 Male, age 18, unknown 36.1
2588 Male, age 74, left hemisphere 33.5
1865 Male, age 51, unknown 32.9
2503 Female, age 72, unknown 30.8
2584 Male, age 75, left hemisphere 27.2
1954 Female, age 42, unknown 26.7
2769 Male, age 72, unknown 26.5
2227 Male, age 72, unknown 24.4
2725 Female, age 75, unknown 24.0
2823 Male, age 76, right hemisphere 22.8
Substantia nigra
nTPM: 48.3
1916 Female, age 42, unknown 76.1
1851 Male, age 51, unknown 61.2
2241 Male, age 72, unknown 60.9
2409 Female, age 72, unknown 51.1
1941 Male, age 53, unknown 50.7
1889 Female, age 72, unknown 41.1
2665 Male, age 74, both hemispheres 40.3
2583 Male, age 75, right hemisphere 34.9
2699 Male, age 18, unknown 33.6
2590 Female, age 75, unknown 33.4
Superior colliculus
nTPM: 23.1
2668 Female, age 75, unknown 50.4
1913 Female, age 42, unknown 26.5
2261 Male, age 18, unknown 24.7
1895 Male, age 76, right hemisphere 23.3
2587 Male, age 74, left hemisphere 22.6
2087 Female, age 72, unknown 22.0
1796 Male, age 53, unknown 21.3
1839 Male, age 51, unknown 17.1
1995 Male, age 72, unknown 16.4
2664 Male, age 75, both hemispheres 7.1
Ventral tegmental area
nTPM: 38.6
2410 Female, age 72, unknown 58.3
2218 Male, age 76, both hemispheres 50.1
1915 Female, age 42, unknown 46.6
1942 Male, age 51, unknown 28.0
2223 Female, age 72, unknown 25.9
2021 Male, age 53, unknown 22.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.5
Samples: 139

Max nTPM: 132.9
Min nTPM: 9.5
Std nTPM: 20.3
Median nTPM: 45.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 132.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 120.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 111.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 106.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 91.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 88.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 83.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 76.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 75.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 75.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 74.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 117.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.7
FF:10158-103A5 76 years, female 117.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.0
Pig sample Sample description nTPM
Midbrain
nTPM: 32.6
Samples: 4

Max nTPM: 47.0
Min nTPM: 26.6
Sample A Female 26.6
Sample B Female 26.9
Sample C Male 47.0
Sample D Male 30.0
Periaqueductal gray
nTPM: 24.5
Samples: 3

Max nTPM: 28.6
Min nTPM: 21.3
Sample B Female 23.5
Sample C Male 28.6
Sample D Male 21.3
Substantia nigra
nTPM: 33.0
Samples: 4

Max nTPM: 45.8
Min nTPM: 20.8
Sample A Female 43.6
Sample B Female 21.8
Sample C Male 45.8
Sample D Male 20.8
Superior colliculi
nTPM: 34.0
Samples: 4

Max nTPM: 50.3
Min nTPM: 17.1
Sample A Female 32.3
Sample B Female 17.1
Sample C Male 50.3
Sample D Male 36.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 56.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 56.0
Samples: 4

Max nTPM: 62.2
Min nTPM: 46.5
Sample A Male 46.5
Sample B Male 57.0
Sample C Female 62.2
Sample D Female 58.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.1
75651167 Antisense, RP_060518_01_C02, Mouse strain C57BL/6J (56 days, male) 8.1
638731 Antisense, RP_040831_02_E10, Mouse strain C57BL/6J (56 days, male) 4.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.