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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:206.5 nTPM
HPA:206.5 nTPM
GTEx:177.2 nTPM
FANTOM5:315.2 Scaled Tags Per Million
Pig:51.9 nTPM
Mouse:30.5 nTPM
Allen mouse:0.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 206.5
Sample id Sample description nTPM
Amygdala
nTPM: 201.6
2695 Female, age 67, right hemisphere 213.9
2514 Male, age 75, right hemisphere 204.2
2814 Male, age 76, right hemisphere 204.2
2517 Female, age 94, left hemisphere 201.9
1987 Female, age 91, left hemisphere 183.7
Basal amygdala
nTPM: 204.5
2609 Male, age 75, right hemisphere 219.1
2827 Female, age 67, right hemisphere 213.2
2685 Female, age 94, left hemisphere 203.2
1955 Male, age 76, both hemispheres 200.3
2110 Male, age 80, left hemisphere 199.1
2243 Female, age 91, right hemisphere 191.8
Central amygdala
nTPM: 203.5
2515 Male, age 75, right hemisphere 211.0
2826 Female, age 94, left hemisphere 204.4
2239 Male, age 80, left hemisphere 202.7
2701 Female, age 91, right hemisphere 200.0
1905 Male, age 76, both hemispheres 199.5
Corticomedial amygdala
nTPM: 199.3
2428 Male, age 75, right hemisphere 206.2
2240 Male, age 76, both hemispheres 204.4
2829 Male, age 80, left hemisphere 200.5
2242 Female, age 91, right hemisphere 199.1
2535 Female, age 67, right hemisphere 195.9
2429 Female, age 94, left hemisphere 189.7
Lateral amygdala
nTPM: 206.5
2516 Male, age 75, right hemisphere 222.4
2830 Female, age 67, right hemisphere 213.0
1883 Male, age 76, both hemispheres 210.7
2256 Male, age 80, left hemisphere 206.3
2534 Female, age 94, left hemisphere 199.1
2255 Female, age 91, right hemisphere 187.2
Stria terminalis, bed nucleus
nTPM: 178.5
2201 Male, age 74, unknown 186.8
1974 Female, age 91, both hemispheres 175.6
2486 Female, age 94, both hemispheres 173.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 177.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 177.2
Samples: 152

Max nTPM: 391.7
Min nTPM: 22.2
Std nTPM: 46.5
Median nTPM: 171.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 391.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 309.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 289.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 265.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 261.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 260.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 258.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 257.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 255.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 254.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 253.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 245.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 243.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 241.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 237.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 234.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 232.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 230.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 227.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 227.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 226.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 224.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 223.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 223.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 222.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 221.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 221.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 219.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 218.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 217.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 211.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 210.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 210.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 209.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 206.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 206.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 201.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 200.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 199.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 198.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 198.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 197.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 197.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 196.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 194.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 192.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 191.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 191.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 190.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 189.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 188.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 187.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 186.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 184.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 184.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 184.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 184.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 183.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 182.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 181.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 181.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 180.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 180.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 180.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 179.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 179.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 179.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 179.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 178.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 177.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 177.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 175.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 173.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 172.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 172.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 171.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 171.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 171.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 168.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 168.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 168.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 167.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 167.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 167.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 167.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 166.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 165.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 164.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 163.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 163.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 163.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 162.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 160.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 159.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 158.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 157.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 157.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 157.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 156.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 156.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 155.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 155.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 155.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 155.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 155.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 154.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 154.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 154.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 154.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 153.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 152.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 152.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 150.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 149.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 148.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 148.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 146.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 145.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 144.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 143.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 142.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 142.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 142.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 142.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 141.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 140.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 139.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 139.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 138.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 137.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 136.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 135.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 133.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 132.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 132.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 132.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 131.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 129.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 128.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 126.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 123.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 120.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 120.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 118.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 116.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 109.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 101.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 100.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 95.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 82.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 65.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 22.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 315.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 315.2
FF:10151-102I7 76 years, female 315.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 51.9
Pig sample Sample description nTPM
Amygdala
nTPM: 51.9
Samples: 4

Max nTPM: 55.9
Min nTPM: 47.3
Sample A Female 47.3
Sample B Female 50.4
Sample C Male 54.1
Sample D Male 55.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 30.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 30.5
Samples: 4

Max nTPM: 33.3
Min nTPM: 26.3
Sample A Male 31.1
Sample B Male 26.3
Sample C Female 33.3
Sample D Female 31.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.2
70238943 Antisense, RP_050526_04_E02, Mouse strain C57BL/6J (56 days, male) 0.4
73834445 Antisense, RP_051212_03_H11, Mouse strain C57BL/6J (56 days, male) 0.0

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