MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:48.2 nTPM
HPA:48.2 nTPM
GTEx:54.8 nTPM
FANTOM5:205.9 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.4
1870 Female, age 42, unknown 52.5
2411 Female, age 72, unknown 45.8
1830 Male, age 51, unknown 44.9
1833 Male, age 53, unknown 44.5
2019 Male, age 18, unknown 44.5
2828 Female, age 72, unknown 40.7
1827 Male, age 72, unknown 38.7
2666 Male, age 74, left hemisphere 38.2
2219 Male, age 76, both hemispheres 36.9
2586 Male, age 75, left hemisphere 36.8
Dorsal raphe nucleus
nTPM: 42.4
2750 Male, age 76, both hemispheres 46.8
2016 Female, age 72, unknown 45.5
2298 Female, age 72, unknown 42.4
1828 Male, age 53, unknown 40.9
2047 Male, age 72, unknown 36.6
Inferior colliculus
nTPM: 40.6
2097 Female, age 72, unknown 42.3
1848 Female, age 42, unknown 40.5
1890 Male, age 53, unknown 40.4
2849 Male, age 72, unknown 39.2
Median raphe nucleus
nTPM: 35.0
2220 Male, age 76, midline 35.0
Pedunculopontine tegmental nucleus
nTPM: 39.7
1921 Female, age 85, both hemispheres 42.4
2334 Male, age 80, both hemispheres 39.7
2338 Male, age 61, both hemispheres 37.1
Periaquaductal grey, anterior
nTPM: 38.4
1947 Male, age 18, unknown 42.0
2502 Female, age 75, unknown 37.5
1795 Male, age 51, unknown 35.8
Periaquaductal grey, dorsal
nTPM: 38.4
2464 Female, age 72, unknown 40.1
1831 Male, age 72, unknown 39.6
1840 Male, age 53, unknown 38.4
2850 Male, age 76, both hemispheres 35.5
Periaquaductal grey, lateral
nTPM: 38.5
2053 Male, age 18, unknown 42.2
2272 Male, age 74, both hemispheres 39.6
2140 Male, age 76, both hemispheres 33.7
Pretectal area
nTPM: 40.2
2273 Male, age 74, both hemispheres 45.5
2667 Female, age 75, unknown 43.8
2316 Male, age 76, right hemisphere 42.2
1815 Male, age 53, unknown 42.0
2224 Female, age 72, unknown 41.0
1817 Female, age 42, unknown 40.5
2407 Male, age 75, both hemispheres 40.2
2825 Male, age 18, unknown 39.5
2007 Male, age 72, unknown 39.2
1816 Male, age 51, unknown 35.3
1944 Female, age 72, unknown 33.2
Red nucleus
nTPM: 48.2
1821 Female, age 72, unknown 61.4
1865 Male, age 51, unknown 54.1
1904 Male, age 53, unknown 53.2
1954 Female, age 42, unknown 52.3
2227 Male, age 72, unknown 48.7
2769 Male, age 72, unknown 48.7
2823 Male, age 76, right hemisphere 47.5
2503 Female, age 72, unknown 43.9
2785 Male, age 18, unknown 43.5
2725 Female, age 75, unknown 43.4
2588 Male, age 74, left hemisphere 42.8
2584 Male, age 75, left hemisphere 38.9
Substantia nigra
nTPM: 39.4
1889 Female, age 72, unknown 42.7
2241 Male, age 72, unknown 42.6
2409 Female, age 72, unknown 41.3
2583 Male, age 75, right hemisphere 41.1
1851 Male, age 51, unknown 40.8
2590 Female, age 75, unknown 38.9
2699 Male, age 18, unknown 38.1
1916 Female, age 42, unknown 37.5
1941 Male, age 53, unknown 36.0
2665 Male, age 74, both hemispheres 34.4
Superior colliculus
nTPM: 41.3
1913 Female, age 42, unknown 47.9
1895 Male, age 76, right hemisphere 46.8
2587 Male, age 74, left hemisphere 45.8
1995 Male, age 72, unknown 45.7
1839 Male, age 51, unknown 41.4
2668 Female, age 75, unknown 41.2
1796 Male, age 53, unknown 39.1
2664 Male, age 75, both hemispheres 36.6
2261 Male, age 18, unknown 35.4
2087 Female, age 72, unknown 33.6
Ventral tegmental area
nTPM: 40.8
2223 Female, age 72, unknown 46.2
2410 Female, age 72, unknown 42.7
1915 Female, age 42, unknown 40.4
1942 Male, age 51, unknown 40.0
2021 Male, age 53, unknown 39.1
2218 Male, age 76, both hemispheres 36.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.8
Samples: 139

Max nTPM: 159.1
Min nTPM: 22.2
Std nTPM: 18.4
Median nTPM: 52.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 159.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 96.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 96.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 91.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 91.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 87.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 87.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 85.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 85.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 85.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 84.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 205.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 205.9
FF:10158-103A5 76 years, female 205.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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