MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:142.2 nTPM
HPA:142.2 nTPM
GTEx:246.6 nTPM
FANTOM5:62.1 Scaled Tags Per Million
Pig:38.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 142.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 127.2
2586 Male, age 75, left hemisphere 155.1
1827 Male, age 72, unknown 137.2
2828 Female, age 72, unknown 131.9
1870 Female, age 42, unknown 128.4
2666 Male, age 74, left hemisphere 127.9
2019 Male, age 18, unknown 122.9
2411 Female, age 72, unknown 121.8
1833 Male, age 53, unknown 116.9
2219 Male, age 76, both hemispheres 115.0
1830 Male, age 51, unknown 114.7
Dorsal raphe nucleus
nTPM: 128.2
2298 Female, age 72, unknown 141.2
2047 Male, age 72, unknown 131.5
1828 Male, age 53, unknown 126.6
2750 Male, age 76, both hemispheres 123.8
2016 Female, age 72, unknown 117.9
Inferior colliculus
nTPM: 128.8
2097 Female, age 72, unknown 136.3
1890 Male, age 53, unknown 133.0
1848 Female, age 42, unknown 124.2
2849 Male, age 72, unknown 121.7
Median raphe nucleus
nTPM: 122.7
2220 Male, age 76, midline 122.7
Pedunculopontine tegmental nucleus
nTPM: 122.6
2334 Male, age 80, both hemispheres 127.4
1921 Female, age 85, both hemispheres 123.3
2338 Male, age 61, both hemispheres 117.2
Periaquaductal grey, anterior
nTPM: 142.2
1795 Male, age 51, unknown 148.8
2502 Female, age 75, unknown 140.8
1947 Male, age 18, unknown 137.2
Periaquaductal grey, dorsal
nTPM: 121.7
1840 Male, age 53, unknown 133.3
1831 Male, age 72, unknown 120.8
2850 Male, age 76, both hemispheres 116.7
2464 Female, age 72, unknown 116.1
Periaquaductal grey, lateral
nTPM: 115.7
2140 Male, age 76, both hemispheres 116.9
2272 Male, age 74, both hemispheres 116.2
2053 Male, age 18, unknown 114.0
Pretectal area
nTPM: 128.0
2007 Male, age 72, unknown 147.4
1944 Female, age 72, unknown 138.0
1816 Male, age 51, unknown 137.5
1817 Female, age 42, unknown 136.4
2667 Female, age 75, unknown 127.9
2224 Female, age 72, unknown 126.8
2825 Male, age 18, unknown 125.8
1815 Male, age 53, unknown 123.0
2273 Male, age 74, both hemispheres 121.7
2316 Male, age 76, right hemisphere 113.3
2407 Male, age 75, both hemispheres 110.1
Red nucleus
nTPM: 125.5
2503 Female, age 72, unknown 144.6
2785 Male, age 18, unknown 139.8
2227 Male, age 72, unknown 132.5
2769 Male, age 72, unknown 129.2
2725 Female, age 75, unknown 128.9
2584 Male, age 75, left hemisphere 125.3
1821 Female, age 72, unknown 124.8
2588 Male, age 74, left hemisphere 123.7
1954 Female, age 42, unknown 118.4
1904 Male, age 53, unknown 116.6
1865 Male, age 51, unknown 115.4
2823 Male, age 76, right hemisphere 106.9
Substantia nigra
nTPM: 128.9
1916 Female, age 42, unknown 149.3
1851 Male, age 51, unknown 140.6
2665 Male, age 74, both hemispheres 136.2
1889 Female, age 72, unknown 134.4
2583 Male, age 75, right hemisphere 131.3
1941 Male, age 53, unknown 127.5
2699 Male, age 18, unknown 123.8
2409 Female, age 72, unknown 119.4
2590 Female, age 75, unknown 119.2
2241 Male, age 72, unknown 106.9
Superior colliculus
nTPM: 128.7
1796 Male, age 53, unknown 148.1
2664 Male, age 75, both hemispheres 143.1
2087 Female, age 72, unknown 140.6
2668 Female, age 75, unknown 133.8
2261 Male, age 18, unknown 129.5
1913 Female, age 42, unknown 124.9
2587 Male, age 74, left hemisphere 122.9
1839 Male, age 51, unknown 117.4
1995 Male, age 72, unknown 116.9
1895 Male, age 76, right hemisphere 109.4
Ventral tegmental area
nTPM: 130.5
1915 Female, age 42, unknown 147.4
1942 Male, age 51, unknown 137.9
2223 Female, age 72, unknown 134.3
2218 Male, age 76, both hemispheres 127.5
2021 Male, age 53, unknown 121.2
2410 Female, age 72, unknown 114.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 246.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 246.6
Samples: 139

Max nTPM: 698.8
Min nTPM: 84.4
Std nTPM: 83.9
Median nTPM: 238.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 698.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 575.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 490.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 465.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 406.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 397.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 387.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 375.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 372.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 366.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 361.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.1
FF:10158-103A5 76 years, female 62.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.3
Pig sample Sample description nTPM
Midbrain
nTPM: 38.3
Samples: 4

Max nTPM: 48.1
Min nTPM: 33.8
Sample A Female 48.1
Sample B Female 33.8
Sample C Male 37.4
Sample D Male 33.9
Periaqueductal gray
nTPM: 30.5
Samples: 3

Max nTPM: 35.9
Min nTPM: 27.5
Sample B Female 28.2
Sample C Male 35.9
Sample D Male 27.5
Substantia nigra
nTPM: 32.1
Samples: 4

Max nTPM: 43.2
Min nTPM: 23.3
Sample A Female 43.2
Sample B Female 28.1
Sample C Male 33.9
Sample D Male 23.3
Superior colliculi
nTPM: 37.3
Samples: 4

Max nTPM: 46.6
Min nTPM: 33.5
Sample A Female 46.6
Sample B Female 33.5
Sample C Male 33.7
Sample D Male 35.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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