MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:237.8 nTPM
HPA:237.8 nTPM
GTEx:319.5 nTPM
FANTOM5:139.2 Scaled Tags Per Million
Pig:152.4 nTPM
Mouse:798.7 nTPM
Allen mouse:12.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 237.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 192.2
2219 Male, age 76, both hemispheres 218.8
1827 Male, age 72, unknown 203.1
2411 Female, age 72, unknown 203.0
2019 Male, age 18, unknown 202.9
2828 Female, age 72, unknown 190.7
1833 Male, age 53, unknown 189.1
1870 Female, age 42, unknown 188.9
1830 Male, age 51, unknown 177.1
2666 Male, age 74, left hemisphere 175.7
2586 Male, age 75, left hemisphere 172.7
Dorsal raphe nucleus
nTPM: 205.2
2298 Female, age 72, unknown 226.0
1828 Male, age 53, unknown 221.0
2047 Male, age 72, unknown 202.3
2750 Male, age 76, both hemispheres 190.7
2016 Female, age 72, unknown 186.2
Inferior colliculus
nTPM: 208.7
2097 Female, age 72, unknown 228.0
1890 Male, age 53, unknown 212.0
1848 Female, age 42, unknown 206.3
2849 Male, age 72, unknown 188.7
Median raphe nucleus
nTPM: 192.3
2220 Male, age 76, midline 192.3
Pedunculopontine tegmental nucleus
nTPM: 200.8
1921 Female, age 85, both hemispheres 212.5
2334 Male, age 80, both hemispheres 205.8
2338 Male, age 61, both hemispheres 184.1
Periaquaductal grey, anterior
nTPM: 193.0
1947 Male, age 18, unknown 204.2
1795 Male, age 51, unknown 190.1
2502 Female, age 75, unknown 184.6
Periaquaductal grey, dorsal
nTPM: 186.1
1840 Male, age 53, unknown 196.4
2464 Female, age 72, unknown 183.8
1831 Male, age 72, unknown 183.4
2850 Male, age 76, both hemispheres 180.9
Periaquaductal grey, lateral
nTPM: 188.3
2272 Male, age 74, both hemispheres 208.3
2053 Male, age 18, unknown 179.6
2140 Male, age 76, both hemispheres 177.0
Pretectal area
nTPM: 208.7
1816 Male, age 51, unknown 232.1
1944 Female, age 72, unknown 230.5
2667 Female, age 75, unknown 229.0
1817 Female, age 42, unknown 226.8
2007 Male, age 72, unknown 223.1
2273 Male, age 74, both hemispheres 210.5
1815 Male, age 53, unknown 204.7
2224 Female, age 72, unknown 197.3
2316 Male, age 76, right hemisphere 189.2
2825 Male, age 18, unknown 185.0
2407 Male, age 75, both hemispheres 167.6
Red nucleus
nTPM: 197.9
1821 Female, age 72, unknown 241.2
2725 Female, age 75, unknown 215.1
1954 Female, age 42, unknown 205.3
2503 Female, age 72, unknown 200.5
2823 Male, age 76, right hemisphere 197.3
2769 Male, age 72, unknown 194.8
2227 Male, age 72, unknown 194.5
2785 Male, age 18, unknown 194.0
1904 Male, age 53, unknown 193.4
1865 Male, age 51, unknown 190.5
2588 Male, age 74, left hemisphere 179.0
2584 Male, age 75, left hemisphere 168.9
Substantia nigra
nTPM: 237.8
1916 Female, age 42, unknown 299.0
2241 Male, age 72, unknown 270.5
1851 Male, age 51, unknown 260.4
1889 Female, age 72, unknown 237.4
2409 Female, age 72, unknown 233.3
2699 Male, age 18, unknown 232.4
1941 Male, age 53, unknown 230.6
2665 Male, age 74, both hemispheres 229.3
2590 Female, age 75, unknown 206.5
2583 Male, age 75, right hemisphere 178.1
Superior colliculus
nTPM: 192.3
2087 Female, age 72, unknown 221.1
1895 Male, age 76, right hemisphere 216.3
1796 Male, age 53, unknown 202.3
2261 Male, age 18, unknown 200.9
2587 Male, age 74, left hemisphere 195.5
2668 Female, age 75, unknown 185.8
1839 Male, age 51, unknown 185.0
1913 Female, age 42, unknown 174.1
1995 Male, age 72, unknown 172.4
2664 Male, age 75, both hemispheres 169.4
Ventral tegmental area
nTPM: 217.1
1915 Female, age 42, unknown 249.0
2410 Female, age 72, unknown 243.0
2218 Male, age 76, both hemispheres 240.5
1942 Male, age 51, unknown 205.6
2223 Female, age 72, unknown 183.7
2021 Male, age 53, unknown 180.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 319.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 319.5
Samples: 139

Max nTPM: 705.6
Min nTPM: 123.1
Std nTPM: 114.9
Median nTPM: 316.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 705.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 689.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 668.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 643.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 576.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 572.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 564.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 559.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 496.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 491.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 487.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 139.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.2
FF:10158-103A5 76 years, female 139.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 152.4
Pig sample Sample description nTPM
Midbrain
nTPM: 130.0
Samples: 4

Max nTPM: 164.8
Min nTPM: 109.1
Sample A Female 124.0
Sample B Female 109.1
Sample C Male 164.8
Sample D Male 122.0
Periaqueductal gray
nTPM: 101.2
Samples: 3

Max nTPM: 114.1
Min nTPM: 85.3
Sample B Female 104.2
Sample C Male 114.1
Sample D Male 85.3
Substantia nigra
nTPM: 116.8
Samples: 4

Max nTPM: 162.4
Min nTPM: 85.6
Sample A Female 162.4
Sample B Female 95.5
Sample C Male 123.6
Sample D Male 85.6
Superior colliculi
nTPM: 152.4
Samples: 4

Max nTPM: 184.5
Min nTPM: 122.3
Sample A Female 179.4
Sample B Female 122.3
Sample C Male 184.5
Sample D Male 123.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 798.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 798.7
Samples: 4

Max nTPM: 815.6
Min nTPM: 768.3
Sample A Male 815.6
Sample B Male 799.5
Sample C Female 768.3
Sample D Female 811.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.3
1579 Antisense, RP_040526_01_D04, Mouse strain C57BL/6J (56 days, male) 12.3
1580 Antisense, RP_040526_01_D04, Mouse strain C57BL/6J (56 days, male) 10.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.