BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:60.3 nTPM
HPA:60.3 nTPM
GTEx:46.3 nTPM
FANTOM5:100.4 Scaled Tags Per Million
Pig:20.2 nTPM
Mouse:20.4 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 60.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 47.7
2288 Male, age 75, left hemisphere 58.0
2481 Female, age 94, left hemisphere 56.9
2289 Male, age 61, right hemisphere 51.7
2846 Female, age 79, unknown 46.7
2290 Female, age 72, unknown 45.8
1854 Male, age 80, left hemisphere 42.7
1857 Female, age 85, left hemisphere 41.9
1781 Male, age 74, unknown 37.8
Claustrum
nTPM: 41.0
1956 Male, age 74, unknown 57.2
2292 Female, age 85, both hemispheres 52.1
2392 Female, age 94, both hemispheres 46.0
2196 Female, age 79, unknown 45.1
2284 Female, age 91, both hemispheres 35.8
2198 Male, age 80, both hemispheres 34.6
2491 Male, age 75, both hemispheres 34.0
2568 Male, age 61, both hemispheres 31.9
2645 Female, age 72, unknown 31.9
Globus pallidus, externus
nTPM: 55.9
1996 Male, age 80, right hemisphere 68.2
2646 Male, age 61, right hemisphere 63.7
2772 Female, age 79, unknown 62.5
2395 Male, age 75, both hemispheres 44.9
2567 Female, age 72, unknown 40.3
Globus pallidus, internus
nTPM: 60.3
2037 Male, age 80, right hemisphere 69.6
1818 Male, age 74, unknown 64.4
2111 Female, age 85, right hemisphere 64.2
2287 Male, age 75, right hemisphere 62.2
2483 Female, age 94, right hemisphere 58.6
2778 Female, age 91, both hemispheres 57.7
2566 Female, age 72, unknown 45.9
Nucleus accumbens
nTPM: 47.7
2391 Female, age 94, left hemisphere 66.2
2698 Female, age 72, unknown 57.0
2286 Male, age 75, left hemisphere 56.2
2732 Male, age 80, right hemisphere 53.4
1806 Female, age 85, left hemisphere 43.4
1783 Male, age 74, unknown 35.8
1856 Female, age 91, right hemisphere 35.7
2824 Male, age 61, right hemisphere 33.9
Nucleus basalis of Meynert
nTPM: 52.1
2569 Male, age 61, both hemispheres 64.7
2484 Female, age 94, left hemisphere 50.8
2393 Male, age 80, right hemisphere 46.7
2821 Male, age 75, both hemispheres 46.3
Nucleus of the diagonal band
nTPM: 31.3
1979 Male, age 74, unknown 37.7
1812 Female, age 91, both hemispheres 34.7
2029 Male, age 61, right hemisphere 28.4
2775 Male, age 80, right hemisphere 28.2
2195 Female, age 85, both hemispheres 27.4
Olfactory tubercle
nTPM: 32.9
1846 Male, age 80, right hemisphere 41.3
2856 Male, age 75, right hemisphere 35.0
2487 Female, age 94, left hemisphere 27.9
1998 Female, age 91, both hemispheres 27.3
Putamen
nTPM: 44.2
2482 Female, age 94, left hemisphere 55.7
1829 Male, age 74, unknown 55.4
2489 Female, age 72, unknown 44.2
1937 Female, age 91, right hemisphere 42.4
2466 Female, age 79, unknown 38.7
2647 Male, age 75, left hemisphere 37.8
1838 Male, age 80, right hemisphere 35.2
Septal nuclei
nTPM: 39.0
2199 Male, age 80, right hemisphere 48.9
2629 Female, age 94, right hemisphere 44.6
2394 Male, age 61, left hemisphere 44.1
2009 Female, age 91, both hemispheres 40.4
2059 Female, age 85, both hemispheres 37.8
2031 Female, age 72, unknown 32.3
1960 Male, age 74, unknown 24.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 46.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 46.3
Samples: 246

Max nTPM: 126.3
Min nTPM: 14.3
Std nTPM: 18.9
Median nTPM: 43.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 126.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 116.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 109.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 104.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 93.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 86.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 85.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 82.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 81.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 80.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 80.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 30.4
Samples: 246

Max nTPM: 121.9
Min nTPM: 10.7
Std nTPM: 16.6
Median nTPM: 25.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 121.9
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 96.5
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 95.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 82.2
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 80.4
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 77.2
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 72.4
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 71.0
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 70.4
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 69.2
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 67.2
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Brain - Putamen (basal ganglia)
Average nTPM: 45.7
Samples: 205

Max nTPM: 162.8
Min nTPM: 15.1
Std nTPM: 20.4
Median nTPM: 41.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 162.8
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 112.5
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 101.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 100.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 100.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 100.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 99.4
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 92.6
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 90.0
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 83.6
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 83.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 100.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 57.5
FF:10164-103B2 76 years, female 57.5
Globus pallidus
Scaled Tags Per Million: 100.4
FF:10161-103A8 76 years, female 112.5
FF:10175-103C4 60 years, female 88.4
Nucleus accumbens
Scaled Tags Per Million: 45.2
FF:10037-101F1 23-56 years, mixed 45.2
Putamen
Scaled Tags Per Million: 37.3
FF:10176-103C5 60 years, female 37.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 20.2
Pig sample Sample description nTPM
Caudate
nTPM: 16.0
Samples: 4

Max nTPM: 18.5
Min nTPM: 13.6
Sample A Female 18.5
Sample B Female 16.3
Sample C Male 15.7
Sample D Male 13.6
Putamen
nTPM: 19.2
Samples: 4

Max nTPM: 30.6
Min nTPM: 11.9
Sample A Female 30.6
Sample B Female 11.9
Sample C Male 14.9
Sample D Male 19.2
Septum
nTPM: 20.3
Samples: 4

Max nTPM: 24.7
Min nTPM: 17.3
Sample A Female 24.7
Sample B Female 17.3
Sample C Male 18.9
Sample D Male 20.1
Ventral pallidum
nTPM: 20.1
Samples: 4

Max nTPM: 29.2
Min nTPM: 14.1
Sample A Female 17.4
Sample B Female 14.1
Sample C Male 19.7
Sample D Male 29.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 20.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 20.4
Samples: 4

Max nTPM: 20.7
Min nTPM: 20.0
Sample A Male 20.6
Sample B Male 20.3
Sample C Female 20.0
Sample D Female 20.7
Septum
nTPM: 19.7
Samples: 4

Max nTPM: 23.5
Min nTPM: 13.4
Sample A Male 13.4
Sample B Male 20.8
Sample C Female 23.5
Sample D Female 21.2
Ventral forebrain
nTPM: 14.2
Samples: 4

Max nTPM: 14.9
Min nTPM: 13.6
Sample A Male 13.6
Sample B Male 13.7
Sample C Female 14.5
Sample D Female 14.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68080674 Antisense, RP_040929_01_D04, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
68080674 Antisense, RP_040929_01_D04, Mouse strain C57BL/6J (56 days, male) 0.1

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