MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:380.9 nTPM
HPA:380.9 nTPM
GTEx:192.4 nTPM
FANTOM5:256.4 Scaled Tags Per Million
Pig:225.4 nTPM
Mouse:0.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 380.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 256.3
2828 Female, age 72, unknown 327.6
1870 Female, age 42, unknown 287.1
1827 Male, age 72, unknown 280.7
2586 Male, age 75, left hemisphere 274.3
1833 Male, age 53, unknown 263.2
1830 Male, age 51, unknown 246.4
2411 Female, age 72, unknown 233.3
2666 Male, age 74, left hemisphere 223.5
2219 Male, age 76, both hemispheres 221.4
2019 Male, age 18, unknown 205.5
Dorsal raphe nucleus
nTPM: 312.3
2016 Female, age 72, unknown 378.1
1828 Male, age 53, unknown 341.4
2298 Female, age 72, unknown 324.9
2047 Male, age 72, unknown 296.9
2750 Male, age 76, both hemispheres 220.0
Inferior colliculus
nTPM: 327.0
2849 Male, age 72, unknown 349.6
1848 Female, age 42, unknown 347.4
2097 Female, age 72, unknown 331.4
1890 Male, age 53, unknown 279.8
Median raphe nucleus
nTPM: 213.5
2220 Male, age 76, midline 213.5
Pedunculopontine tegmental nucleus
nTPM: 232.5
1921 Female, age 85, both hemispheres 258.2
2338 Male, age 61, both hemispheres 230.1
2334 Male, age 80, both hemispheres 209.3
Periaquaductal grey, anterior
nTPM: 311.8
1795 Male, age 51, unknown 328.7
1947 Male, age 18, unknown 304.8
2502 Female, age 75, unknown 301.8
Periaquaductal grey, dorsal
nTPM: 354.0
1840 Male, age 53, unknown 422.3
2850 Male, age 76, both hemispheres 358.2
2464 Female, age 72, unknown 318.2
1831 Male, age 72, unknown 317.4
Periaquaductal grey, lateral
nTPM: 380.9
2053 Male, age 18, unknown 422.1
2272 Male, age 74, both hemispheres 367.1
2140 Male, age 76, both hemispheres 353.6
Pretectal area
nTPM: 328.1
2273 Male, age 74, both hemispheres 434.8
2224 Female, age 72, unknown 391.6
2667 Female, age 75, unknown 364.8
2825 Male, age 18, unknown 357.8
2407 Male, age 75, both hemispheres 320.0
1944 Female, age 72, unknown 317.5
1816 Male, age 51, unknown 312.0
1817 Female, age 42, unknown 301.6
2316 Male, age 76, right hemisphere 298.7
1815 Male, age 53, unknown 285.3
2007 Male, age 72, unknown 225.3
Red nucleus
nTPM: 257.2
1821 Female, age 72, unknown 310.7
2503 Female, age 72, unknown 288.3
2769 Male, age 72, unknown 283.6
2227 Male, age 72, unknown 282.6
1954 Female, age 42, unknown 279.8
2725 Female, age 75, unknown 272.4
1904 Male, age 53, unknown 262.5
2823 Male, age 76, right hemisphere 254.6
1865 Male, age 51, unknown 249.3
2588 Male, age 74, left hemisphere 209.5
2785 Male, age 18, unknown 200.8
2584 Male, age 75, left hemisphere 192.4
Substantia nigra
nTPM: 300.8
2699 Male, age 18, unknown 432.4
1916 Female, age 42, unknown 352.5
2409 Female, age 72, unknown 319.5
1851 Male, age 51, unknown 316.4
1889 Female, age 72, unknown 303.1
2241 Male, age 72, unknown 277.9
2583 Male, age 75, right hemisphere 270.6
2590 Female, age 75, unknown 270.6
1941 Male, age 53, unknown 235.8
2665 Male, age 74, both hemispheres 229.4
Superior colliculus
nTPM: 308.4
2664 Male, age 75, both hemispheres 380.4
1995 Male, age 72, unknown 343.5
2087 Female, age 72, unknown 315.3
2261 Male, age 18, unknown 312.1
1796 Male, age 53, unknown 305.4
1839 Male, age 51, unknown 305.0
1913 Female, age 42, unknown 298.9
2587 Male, age 74, left hemisphere 297.2
2668 Female, age 75, unknown 278.7
1895 Male, age 76, right hemisphere 247.0
Ventral tegmental area
nTPM: 284.7
1915 Female, age 42, unknown 324.8
2021 Male, age 53, unknown 320.6
2410 Female, age 72, unknown 305.5
1942 Male, age 51, unknown 264.4
2218 Male, age 76, both hemispheres 262.8
2223 Female, age 72, unknown 230.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 192.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 192.4
Samples: 139

Max nTPM: 792.6
Min nTPM: 12.1
Std nTPM: 137.0
Median nTPM: 165.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 792.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 709.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 654.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 629.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 480.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 474.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 470.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 465.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 449.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 386.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 378.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 256.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 256.4
FF:10158-103A5 76 years, female 256.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 225.4
Pig sample Sample description nTPM
Midbrain
nTPM: 195.2
Samples: 4

Max nTPM: 239.6
Min nTPM: 136.2
Sample A Female 239.6
Sample B Female 233.9
Sample C Male 171.1
Sample D Male 136.2
Periaqueductal gray
nTPM: 225.4
Samples: 3

Max nTPM: 248.6
Min nTPM: 194.6
Sample B Female 248.6
Sample C Male 232.9
Sample D Male 194.6
Substantia nigra
nTPM: 201.7
Samples: 4

Max nTPM: 224.8
Min nTPM: 185.0
Sample A Female 209.7
Sample B Female 224.8
Sample C Male 185.0
Sample D Male 187.1
Superior colliculi
nTPM: 204.3
Samples: 4

Max nTPM: 312.5
Min nTPM: 150.8
Sample A Female 197.3
Sample B Female 312.5
Sample C Male 150.8
Sample D Male 156.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69257331 Antisense, RP_050331_02_D01, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.