HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.5 nTPM
HPA:42.5 nTPM
GTEx:23.1 nTPM
FANTOM5:81.5 Scaled Tags Per Million
Pig:33.9 nTPM
Mouse:32.2 nTPM
Allen mouse:0.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 42.5
Sample id Sample description nTPM
Hippocampus
nTPM: 34.8
1911 Female, age 85, right hemisphere 45.4
2529 Female, age 94, left hemisphere 43.2
2621 Female, age 67, right hemisphere 31.4
1898 Male, age 80, left hemisphere 30.4
2148 Female, age 91, left hemisphere 29.9
1855 Male, age 76, left hemisphere 28.4
Dentate gyrus
nTPM: 27.9
1927 Female, age 91, both hemispheres 33.6
2246 Female, age 85, both hemispheres 32.3
2528 Male, age 74, both hemispheres 30.5
2530 Female, age 94, left hemisphere 25.6
2010 Male, age 76, both hemispheres 23.8
2531 Female, age 67, both hemispheres 21.8
Entorhinal gyrus
nTPM: 37.2
1938 Female, age 85, left hemisphere 42.1
2764 Male, age 80, right hemisphere 40.5
2686 Male, age 75, right hemisphere 39.0
1787 Male, age 76, left hemisphere 36.9
2117 Female, age 91, right hemisphere 34.2
2613 Female, age 94, left hemisphere 30.4
Hippocampus, CA1
nTPM: 41.2
2749 Male, age 80, left hemisphere 78.0
2082 Female, age 91, right hemisphere 41.3
2527 Male, age 74, both hemispheres 38.3
1873 Female, age 85, both hemispheres 28.6
2045 Male, age 76, both hemispheres 19.8
Hippocampus, CA2
nTPM: 34.0
2113 Female, age 91, right hemisphere 42.2
1892 Male, age 76, both hemispheres 34.8
2437 Female, age 94, left hemisphere 34.1
1963 Male, age 80, left hemisphere 33.5
1940 Female, age 85, left hemisphere 30.2
2249 Male, age 74, both hemispheres 29.1
Hippocampus, CA3
nTPM: 40.1
2137 Male, age 80, left hemisphere 79.1
1867 Male, age 76, both hemispheres 43.0
1891 Female, age 85, both hemispheres 36.4
2436 Male, age 74, both hemispheres 29.8
2861 Female, age 67, both hemispheres 29.3
2620 Female, age 94, left hemisphere 23.2
Parahippocampal cortex
nTPM: 38.6
2245 Female, age 91, both hemispheres 48.7
2622 Female, age 67, right hemisphere 41.8
1850 Male, age 80, both hemispheres 40.0
1933 Female, age 85, both hemispheres 39.6
2018 Male, age 76, both hemispheres 38.4
2692 Male, age 74, both hemispheres 37.8
2250 Female, age 67, right hemisphere 37.5
1990 Female, age 91, right hemisphere 35.7
2693 Female, age 94, both hemispheres 35.1
2532 Female, age 72, left hemisphere 31.5
Perirhinal gyrus
nTPM: 42.5
1847 Female, age 91, left hemisphere 48.2
2848 Male, age 76, right hemisphere 44.0
1794 Male, age 80, right hemisphere 42.0
2521 Female, age 94, right hemisphere 42.0
1841 Female, age 85, right hemisphere 36.4
Subiculum
nTPM: 38.8
1901 Male, age 80, both hemispheres 50.4
2438 Female, age 94, left hemisphere 37.9
2042 Male, age 76, both hemispheres 37.7
2619 Male, age 74, both hemispheres 37.3
1977 Female, age 85, both hemispheres 36.2
2729 Female, age 91, right hemisphere 33.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 23.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.1
Samples: 197

Max nTPM: 51.8
Min nTPM: 6.6
Std nTPM: 8.6
Median nTPM: 21.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 51.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 50.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 44.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 43.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 43.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 42.0
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 41.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 41.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 40.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 38.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 37.9
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 81.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 81.5
FF:10169-103B7 60 years, female 93.1
FF:10153-102I9 76 years, female 69.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 33.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 20.8
Samples: 4

Max nTPM: 26.7
Min nTPM: 16.2
Sample A Female 20.6
Sample B Female 19.6
Sample C Male 26.7
Sample D Male 16.2
Entorhinal cortex
nTPM: 26.1
Samples: 4

Max nTPM: 31.4
Min nTPM: 22.3
Sample A Female 26.3
Sample B Female 24.3
Sample C Male 31.4
Sample D Male 22.3
Subiculum
nTPM: 33.9
Samples: 4

Max nTPM: 37.0
Min nTPM: 31.6
Sample A Female 37.0
Sample B Female 33.3
Sample C Male 33.7
Sample D Male 31.6
Ventral hippocampus
nTPM: 24.0
Samples: 4

Max nTPM: 30.3
Min nTPM: 18.6
Sample A Female 18.6
Sample B Female 23.4
Sample C Male 30.3
Sample D Male 23.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 32.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 32.3
Samples: 4

Max nTPM: 39.9
Min nTPM: 28.7
Sample A Male 28.7
Sample B Male 30.8
Sample C Female 29.6
Sample D Female 39.9
Hippocampal formation
nTPM: 18.7
Samples: 4

Max nTPM: 21.8
Min nTPM: 16.0
Sample A Male 21.8
Sample B Male 16.0
Sample C Female 16.2
Sample D Female 20.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.6
76003319 Antisense, RP_060608_02_A10, Mouse strain C57BL/6J (56 days, male) 1.1
70919519 Antisense, RP_050713_01_E05, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.