MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:35.3 nTPM
HPA:35.3 nTPM
GTEx:21.3 nTPM
FANTOM5:32.1 Scaled Tags Per Million
Pig:24.7 nTPM
Mouse:18.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.4
2586 Male, age 75, left hemisphere 51.0
1827 Male, age 72, unknown 36.5
2828 Female, age 72, unknown 35.0
2666 Male, age 74, left hemisphere 31.5
1870 Female, age 42, unknown 28.4
2411 Female, age 72, unknown 28.3
1833 Male, age 53, unknown 28.2
1830 Male, age 51, unknown 24.8
2219 Male, age 76, both hemispheres 24.8
2019 Male, age 18, unknown 15.8
Dorsal raphe nucleus
nTPM: 31.9
2047 Male, age 72, unknown 35.4
2016 Female, age 72, unknown 35.0
1828 Male, age 53, unknown 31.3
2298 Female, age 72, unknown 31.0
2750 Male, age 76, both hemispheres 26.9
Inferior colliculus
nTPM: 28.0
1848 Female, age 42, unknown 31.3
2849 Male, age 72, unknown 29.7
1890 Male, age 53, unknown 28.3
2097 Female, age 72, unknown 22.6
Median raphe nucleus
nTPM: 28.0
2220 Male, age 76, midline 28.0
Pedunculopontine tegmental nucleus
nTPM: 24.3
1921 Female, age 85, both hemispheres 28.0
2334 Male, age 80, both hemispheres 24.2
2338 Male, age 61, both hemispheres 20.6
Periaquaductal grey, anterior
nTPM: 35.3
1795 Male, age 51, unknown 40.5
1947 Male, age 18, unknown 38.8
2502 Female, age 75, unknown 26.7
Periaquaductal grey, dorsal
nTPM: 32.8
1840 Male, age 53, unknown 38.5
2464 Female, age 72, unknown 32.3
2850 Male, age 76, both hemispheres 30.3
1831 Male, age 72, unknown 30.0
Periaquaductal grey, lateral
nTPM: 31.7
2053 Male, age 18, unknown 39.5
2140 Male, age 76, both hemispheres 30.3
2272 Male, age 74, both hemispheres 25.3
Pretectal area
nTPM: 30.2
2825 Male, age 18, unknown 35.3
2224 Female, age 72, unknown 34.8
1816 Male, age 51, unknown 34.1
1944 Female, age 72, unknown 34.1
2667 Female, age 75, unknown 32.8
2407 Male, age 75, both hemispheres 32.2
1815 Male, age 53, unknown 27.5
2273 Male, age 74, both hemispheres 26.7
2007 Male, age 72, unknown 25.3
1817 Female, age 42, unknown 25.1
2316 Male, age 76, right hemisphere 24.1
Red nucleus
nTPM: 24.2
2584 Male, age 75, left hemisphere 28.2
2588 Male, age 74, left hemisphere 27.2
1954 Female, age 42, unknown 27.1
2725 Female, age 75, unknown 26.0
2503 Female, age 72, unknown 24.8
2769 Male, age 72, unknown 24.5
2227 Male, age 72, unknown 24.3
1904 Male, age 53, unknown 23.4
1865 Male, age 51, unknown 22.9
2823 Male, age 76, right hemisphere 22.3
1821 Female, age 72, unknown 21.8
2785 Male, age 18, unknown 18.3
Substantia nigra
nTPM: 32.1
2583 Male, age 75, right hemisphere 38.2
2665 Male, age 74, both hemispheres 38.1
2699 Male, age 18, unknown 35.0
2590 Female, age 75, unknown 34.6
1916 Female, age 42, unknown 34.4
2241 Male, age 72, unknown 31.6
2409 Female, age 72, unknown 29.7
1851 Male, age 51, unknown 29.5
1889 Female, age 72, unknown 27.9
1941 Male, age 53, unknown 21.7
Superior colliculus
nTPM: 30.2
2664 Male, age 75, both hemispheres 42.4
2261 Male, age 18, unknown 39.4
1796 Male, age 53, unknown 37.0
2087 Female, age 72, unknown 30.9
2668 Female, age 75, unknown 29.5
1839 Male, age 51, unknown 26.1
2587 Male, age 74, left hemisphere 25.9
1995 Male, age 72, unknown 24.8
1913 Female, age 42, unknown 23.2
1895 Male, age 76, right hemisphere 22.9
Ventral tegmental area
nTPM: 30.8
2021 Male, age 53, unknown 34.9
1942 Male, age 51, unknown 34.7
1915 Female, age 42, unknown 31.9
2223 Female, age 72, unknown 29.0
2218 Male, age 76, both hemispheres 27.5
2410 Female, age 72, unknown 27.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.3
Samples: 139

Max nTPM: 45.7
Min nTPM: 5.6
Std nTPM: 7.7
Median nTPM: 20.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 45.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 43.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 41.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 38.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 38.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 37.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 35.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 34.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 34.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 33.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 33.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.1
FF:10158-103A5 76 years, female 32.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.7
Pig sample Sample description nTPM
Midbrain
nTPM: 22.0
Samples: 4

Max nTPM: 23.5
Min nTPM: 20.7
Sample A Female 23.5
Sample B Female 22.3
Sample C Male 21.6
Sample D Male 20.7
Periaqueductal gray
nTPM: 24.7
Samples: 3

Max nTPM: 26.7
Min nTPM: 23.5
Sample B Female 23.8
Sample C Male 26.7
Sample D Male 23.5
Substantia nigra
nTPM: 24.6
Samples: 4

Max nTPM: 28.4
Min nTPM: 21.8
Sample A Female 24.1
Sample B Female 24.2
Sample C Male 28.4
Sample D Male 21.8
Superior colliculi
nTPM: 17.8
Samples: 4

Max nTPM: 20.7
Min nTPM: 14.1
Sample A Female 19.2
Sample B Female 14.1
Sample C Male 17.1
Sample D Male 20.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.2
Samples: 4

Max nTPM: 19.1
Min nTPM: 17.4
Sample A Male 17.9
Sample B Male 18.3
Sample C Female 17.4
Sample D Female 19.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
76003319 Antisense, RP_060608_02_A10, Mouse strain C57BL/6J (56 days, male) 0.3
70919519 Antisense, RP_050713_01_E05, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.