MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:155.2 nTPM
HPA:155.2 nTPM
GTEx:227.3 nTPM
FANTOM5:544.5 Scaled Tags Per Million
Pig:97.2 nTPM
Mouse:89.0 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 155.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 137.0
1870 Female, age 42, unknown 156.6
1830 Male, age 51, unknown 149.4
1833 Male, age 53, unknown 144.9
2019 Male, age 18, unknown 140.2
2411 Female, age 72, unknown 138.5
2666 Male, age 74, left hemisphere 135.3
1827 Male, age 72, unknown 135.2
2828 Female, age 72, unknown 132.6
2219 Male, age 76, both hemispheres 120.6
2586 Male, age 75, left hemisphere 117.0
Dorsal raphe nucleus
nTPM: 126.3
2750 Male, age 76, both hemispheres 145.0
2016 Female, age 72, unknown 133.4
1828 Male, age 53, unknown 126.9
2047 Male, age 72, unknown 115.2
2298 Female, age 72, unknown 110.9
Inferior colliculus
nTPM: 135.9
2849 Male, age 72, unknown 145.2
1890 Male, age 53, unknown 135.3
1848 Female, age 42, unknown 133.6
2097 Female, age 72, unknown 129.6
Median raphe nucleus
nTPM: 134.5
2220 Male, age 76, midline 134.5
Pedunculopontine tegmental nucleus
nTPM: 138.9
2334 Male, age 80, both hemispheres 143.8
2338 Male, age 61, both hemispheres 138.1
1921 Female, age 85, both hemispheres 134.9
Periaquaductal grey, anterior
nTPM: 126.4
1947 Male, age 18, unknown 132.5
2502 Female, age 75, unknown 129.4
1795 Male, age 51, unknown 117.3
Periaquaductal grey, dorsal
nTPM: 131.6
2850 Male, age 76, both hemispheres 140.7
1831 Male, age 72, unknown 133.2
2464 Female, age 72, unknown 130.5
1840 Male, age 53, unknown 122.0
Periaquaductal grey, lateral
nTPM: 129.7
2053 Male, age 18, unknown 132.9
2140 Male, age 76, both hemispheres 130.7
2272 Male, age 74, both hemispheres 125.5
Pretectal area
nTPM: 133.2
1815 Male, age 53, unknown 143.4
2407 Male, age 75, both hemispheres 140.0
2316 Male, age 76, right hemisphere 137.5
2825 Male, age 18, unknown 135.3
1944 Female, age 72, unknown 135.2
2667 Female, age 75, unknown 134.7
1817 Female, age 42, unknown 131.6
1816 Male, age 51, unknown 129.2
2007 Male, age 72, unknown 128.1
2273 Male, age 74, both hemispheres 126.6
2224 Female, age 72, unknown 123.3
Red nucleus
nTPM: 155.2
1865 Male, age 51, unknown 171.3
2823 Male, age 76, right hemisphere 161.2
2503 Female, age 72, unknown 161.0
1904 Male, age 53, unknown 159.5
1821 Female, age 72, unknown 156.3
1954 Female, age 42, unknown 155.2
2769 Male, age 72, unknown 152.8
2227 Male, age 72, unknown 152.1
2725 Female, age 75, unknown 151.8
2588 Male, age 74, left hemisphere 149.0
2584 Male, age 75, left hemisphere 147.4
2785 Male, age 18, unknown 145.0
Substantia nigra
nTPM: 134.6
2583 Male, age 75, right hemisphere 146.7
2409 Female, age 72, unknown 146.4
2590 Female, age 75, unknown 145.6
1889 Female, age 72, unknown 136.4
2699 Male, age 18, unknown 134.3
2241 Male, age 72, unknown 131.7
1941 Male, age 53, unknown 129.8
2665 Male, age 74, both hemispheres 129.8
1851 Male, age 51, unknown 129.4
1916 Female, age 42, unknown 116.0
Superior colliculus
nTPM: 137.4
1913 Female, age 42, unknown 164.6
1995 Male, age 72, unknown 152.2
1895 Male, age 76, right hemisphere 144.7
2587 Male, age 74, left hemisphere 141.7
1839 Male, age 51, unknown 136.4
2087 Female, age 72, unknown 133.7
1796 Male, age 53, unknown 128.8
2261 Male, age 18, unknown 128.7
2668 Female, age 75, unknown 123.7
2664 Male, age 75, both hemispheres 119.5
Ventral tegmental area
nTPM: 132.3
2223 Female, age 72, unknown 141.1
2410 Female, age 72, unknown 137.4
2218 Male, age 76, both hemispheres 132.1
2021 Male, age 53, unknown 131.7
1942 Male, age 51, unknown 127.4
1915 Female, age 42, unknown 123.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 227.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 227.3
Samples: 139

Max nTPM: 478.0
Min nTPM: 101.7
Std nTPM: 63.7
Median nTPM: 220.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 478.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 470.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 389.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 381.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 378.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 375.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 364.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 342.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 338.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 331.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 326.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 544.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 544.5
FF:10158-103A5 76 years, female 544.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 97.2
Pig sample Sample description nTPM
Midbrain
nTPM: 97.2
Samples: 4

Max nTPM: 128.8
Min nTPM: 83.0
Sample A Female 128.8
Sample B Female 91.5
Sample C Male 85.5
Sample D Male 83.0
Periaqueductal gray
nTPM: 84.4
Samples: 3

Max nTPM: 86.2
Min nTPM: 82.6
Sample B Female 82.6
Sample C Male 86.2
Sample D Male 84.5
Substantia nigra
nTPM: 84.9
Samples: 4

Max nTPM: 96.7
Min nTPM: 72.1
Sample A Female 82.6
Sample B Female 72.1
Sample C Male 88.1
Sample D Male 96.7
Superior colliculi
nTPM: 84.4
Samples: 4

Max nTPM: 96.2
Min nTPM: 62.9
Sample A Female 85.0
Sample B Female 62.9
Sample C Male 96.2
Sample D Male 93.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 89.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 89.0
Samples: 4

Max nTPM: 101.2
Min nTPM: 80.0
Sample A Male 101.2
Sample B Male 87.8
Sample C Female 86.9
Sample D Female 80.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
68445161 Antisense, RP_050111_02_H06, Mouse strain C57BL/6J (56 days, male) 4.5
572 Antisense, RP_Baylor_103185, Mouse strain C57BL/6J (56 days, male) 0.2
571 Antisense, RP_Baylor_103185, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.