BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:84.5 nTPM
HPA:84.5 nTPM
GTEx:50.1 nTPM
FANTOM5:195.7 Scaled Tags Per Million
Pig:132.2 nTPM
Mouse:410.8 nTPM
Allen mouse:14.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA070321
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 84.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 74.3
2846 Female, age 79, unknown 78.4
1857 Female, age 85, left hemisphere 78.2
2288 Male, age 75, left hemisphere 77.6
2481 Female, age 94, left hemisphere 77.1
1854 Male, age 80, left hemisphere 74.4
1781 Male, age 74, unknown 72.2
2290 Female, age 72, unknown 71.7
2289 Male, age 61, right hemisphere 64.5
Claustrum
nTPM: 75.4
2392 Female, age 94, both hemispheres 88.0
2198 Male, age 80, both hemispheres 78.1
2491 Male, age 75, both hemispheres 78.1
1956 Male, age 74, unknown 77.3
2196 Female, age 79, unknown 73.7
2284 Female, age 91, both hemispheres 73.6
2568 Male, age 61, both hemispheres 72.7
2292 Female, age 85, both hemispheres 70.2
2645 Female, age 72, unknown 66.5
Globus pallidus, externus
nTPM: 74.9
2395 Male, age 75, both hemispheres 85.4
2772 Female, age 79, unknown 83.3
1996 Male, age 80, right hemisphere 76.5
2567 Female, age 72, unknown 65.3
2646 Male, age 61, right hemisphere 63.8
Globus pallidus, internus
nTPM: 78.9
2287 Male, age 75, right hemisphere 94.7
2778 Female, age 91, both hemispheres 85.1
1818 Male, age 74, unknown 78.9
2483 Female, age 94, right hemisphere 77.9
2111 Female, age 85, right hemisphere 75.4
2037 Male, age 80, right hemisphere 73.6
2566 Female, age 72, unknown 66.7
Nucleus accumbens
nTPM: 78.3
1856 Female, age 91, right hemisphere 86.9
2286 Male, age 75, left hemisphere 83.6
2391 Female, age 94, left hemisphere 80.8
2824 Male, age 61, right hemisphere 78.6
2698 Female, age 72, unknown 77.4
1806 Female, age 85, left hemisphere 77.0
1783 Male, age 74, unknown 74.0
2732 Male, age 80, right hemisphere 68.2
Nucleus basalis of Meynert
nTPM: 71.3
2821 Male, age 75, both hemispheres 77.5
2393 Male, age 80, right hemisphere 73.2
2484 Female, age 94, left hemisphere 70.6
2569 Male, age 61, both hemispheres 64.0
Nucleus of the diagonal band
nTPM: 84.5
1812 Female, age 91, both hemispheres 93.2
2775 Male, age 80, right hemisphere 88.6
2195 Female, age 85, both hemispheres 85.0
2029 Male, age 61, right hemisphere 79.5
1979 Male, age 74, unknown 76.1
Olfactory tubercle
nTPM: 82.2
2487 Female, age 94, left hemisphere 85.5
1846 Male, age 80, right hemisphere 83.8
1998 Female, age 91, both hemispheres 81.5
2856 Male, age 75, right hemisphere 77.9
Putamen
nTPM: 72.0
1937 Female, age 91, right hemisphere 80.9
1838 Male, age 80, right hemisphere 76.9
2466 Female, age 79, unknown 76.6
1829 Male, age 74, unknown 73.8
2482 Female, age 94, left hemisphere 69.1
2647 Male, age 75, left hemisphere 67.3
2489 Female, age 72, unknown 59.1
Septal nuclei
nTPM: 81.2
2031 Female, age 72, unknown 94.8
2394 Male, age 61, left hemisphere 85.7
1960 Male, age 74, unknown 84.0
2009 Female, age 91, both hemispheres 80.8
2629 Female, age 94, right hemisphere 78.4
2199 Male, age 80, right hemisphere 77.4
2059 Female, age 85, both hemispheres 67.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 50.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.0
Samples: 246

Max nTPM: 197.6
Min nTPM: 2.3
Std nTPM: 22.2
Median nTPM: 37.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 197.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 120.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 118.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 117.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 116.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 97.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 96.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 93.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 87.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 81.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 81.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 50.1
Samples: 246

Max nTPM: 127.8
Min nTPM: 9.8
Std nTPM: 21.1
Median nTPM: 48.0
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 127.8
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 109.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 107.7
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 106.4
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 103.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 102.3
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 101.3
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 99.3
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 99.1
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 92.6
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 91.3
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Brain - Putamen (basal ganglia)
Average nTPM: 44.5
Samples: 205

Max nTPM: 130.2
Min nTPM: 6.9
Std nTPM: 20.9
Median nTPM: 41.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 130.2
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 112.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 111.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 102.0
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 95.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 93.6
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 92.5
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 87.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 87.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 84.2
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 80.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 195.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 108.9
FF:10164-103B2 76 years, female 108.9
Globus pallidus
Scaled Tags Per Million: 101.6
FF:10175-103C4 60 years, female 114.4
FF:10161-103A8 76 years, female 88.8
Nucleus accumbens
Scaled Tags Per Million: 169.4
FF:10037-101F1 23-56 years, mixed 169.4
Putamen
Scaled Tags Per Million: 195.7
FF:10176-103C5 60 years, female 195.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 132.2
Pig sample Sample description nTPM
Caudate
nTPM: 93.4
Samples: 4

Max nTPM: 104.8
Min nTPM: 76.6
Sample A Female 104.8
Sample B Female 76.6
Sample C Male 101.1
Sample D Male 91.1
Putamen
nTPM: 121.6
Samples: 4

Max nTPM: 156.6
Min nTPM: 95.4
Sample A Female 128.9
Sample B Female 95.4
Sample C Male 156.6
Sample D Male 105.3
Septum
nTPM: 132.2
Samples: 4

Max nTPM: 178.4
Min nTPM: 106.6
Sample A Female 117.3
Sample B Female 106.6
Sample C Male 178.4
Sample D Male 126.4
Ventral pallidum
nTPM: 115.1
Samples: 4

Max nTPM: 152.7
Min nTPM: 93.7
Sample A Female 110.5
Sample B Female 103.5
Sample C Male 152.7
Sample D Male 93.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 410.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 301.7
Samples: 4

Max nTPM: 325.3
Min nTPM: 277.6
Sample A Male 294.9
Sample B Male 277.6
Sample C Female 325.3
Sample D Female 309.0
Septum
nTPM: 410.8
Samples: 4

Max nTPM: 435.4
Min nTPM: 393.5
Sample A Male 393.5
Sample B Male 435.4
Sample C Female 406.4
Sample D Female 407.9
Ventral forebrain
nTPM: 352.7
Samples: 4

Max nTPM: 361.2
Min nTPM: 348.4
Sample A Male 348.4
Sample B Male 361.2
Sample C Female 350.1
Sample D Female 350.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 14.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 14.6
583562 Antisense, RP_040831_02_H12, Mouse strain C57BL/6J (56 days, male) 20.0
81599674 Antisense, RP_071219_04_H02, Mouse strain C57BL/6J (56 days, male) 9.3
Pallidum
Expression energy: 13.9
583562 Antisense, RP_040831_02_H12, Mouse strain C57BL/6J (56 days, male) 18.3
81599674 Antisense, RP_071219_04_H02, Mouse strain C57BL/6J (56 days, male) 9.5

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.