MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:14.8 nTPM
HPA:14.8 nTPM
GTEx:12.7 nTPM
FANTOM5:1.9 Scaled Tags Per Million
Pig:14.2 nTPM
Mouse:11.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.8
2219 Male, age 76, both hemispheres 12.3
2019 Male, age 18, unknown 10.8
1833 Male, age 53, unknown 7.9
2666 Male, age 74, left hemisphere 7.6
1830 Male, age 51, unknown 7.1
2411 Female, age 72, unknown 6.9
1827 Male, age 72, unknown 6.7
2828 Female, age 72, unknown 6.7
2586 Male, age 75, left hemisphere 6.1
1870 Female, age 42, unknown 5.8
Dorsal raphe nucleus
nTPM: 7.5
1828 Male, age 53, unknown 10.2
2047 Male, age 72, unknown 8.0
2016 Female, age 72, unknown 6.7
2750 Male, age 76, both hemispheres 6.3
2298 Female, age 72, unknown 6.2
Inferior colliculus
nTPM: 8.6
1890 Male, age 53, unknown 10.5
2097 Female, age 72, unknown 9.9
1848 Female, age 42, unknown 7.1
2849 Male, age 72, unknown 7.0
Median raphe nucleus
nTPM: 6.9
2220 Male, age 76, midline 6.9
Pedunculopontine tegmental nucleus
nTPM: 6.6
1921 Female, age 85, both hemispheres 8.8
2334 Male, age 80, both hemispheres 6.0
2338 Male, age 61, both hemispheres 5.1
Periaquaductal grey, anterior
nTPM: 7.1
2502 Female, age 75, unknown 8.4
1947 Male, age 18, unknown 6.7
1795 Male, age 51, unknown 6.3
Periaquaductal grey, dorsal
nTPM: 6.7
2464 Female, age 72, unknown 7.0
2850 Male, age 76, both hemispheres 7.0
1840 Male, age 53, unknown 6.8
1831 Male, age 72, unknown 5.8
Periaquaductal grey, lateral
nTPM: 6.0
2272 Male, age 74, both hemispheres 8.1
2140 Male, age 76, both hemispheres 5.3
2053 Male, age 18, unknown 4.7
Pretectal area
nTPM: 7.5
2273 Male, age 74, both hemispheres 9.9
2007 Male, age 72, unknown 9.8
1944 Female, age 72, unknown 9.6
1817 Female, age 42, unknown 8.8
1816 Male, age 51, unknown 7.8
1815 Male, age 53, unknown 7.4
2667 Female, age 75, unknown 6.9
2224 Female, age 72, unknown 6.2
2407 Male, age 75, both hemispheres 5.9
2316 Male, age 76, right hemisphere 5.5
2825 Male, age 18, unknown 5.2
Red nucleus
nTPM: 7.6
2785 Male, age 18, unknown 10.3
2588 Male, age 74, left hemisphere 9.7
1821 Female, age 72, unknown 8.9
2725 Female, age 75, unknown 8.6
2584 Male, age 75, left hemisphere 7.7
2769 Male, age 72, unknown 7.3
2227 Male, age 72, unknown 6.9
1865 Male, age 51, unknown 6.7
1954 Female, age 42, unknown 6.5
1904 Male, age 53, unknown 6.4
2503 Female, age 72, unknown 6.4
2823 Male, age 76, right hemisphere 5.8
Substantia nigra
nTPM: 14.8
1916 Female, age 42, unknown 24.1
2241 Male, age 72, unknown 21.9
1851 Male, age 51, unknown 19.1
2665 Male, age 74, both hemispheres 15.2
2699 Male, age 18, unknown 14.2
2409 Female, age 72, unknown 14.1
1941 Male, age 53, unknown 12.5
1889 Female, age 72, unknown 10.3
2590 Female, age 75, unknown 8.6
2583 Male, age 75, right hemisphere 8.2
Superior colliculus
nTPM: 6.4
1895 Male, age 76, right hemisphere 8.1
2668 Female, age 75, unknown 7.9
2087 Female, age 72, unknown 7.4
2587 Male, age 74, left hemisphere 7.2
1796 Male, age 53, unknown 6.6
1839 Male, age 51, unknown 6.2
2664 Male, age 75, both hemispheres 6.0
2261 Male, age 18, unknown 5.9
1995 Male, age 72, unknown 4.9
1913 Female, age 42, unknown 4.2
Ventral tegmental area
nTPM: 10.7
1915 Female, age 42, unknown 14.4
2410 Female, age 72, unknown 13.9
2218 Male, age 76, both hemispheres 12.7
1942 Male, age 51, unknown 9.7
2223 Female, age 72, unknown 6.8
2021 Male, age 53, unknown 6.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.7
Samples: 139

Max nTPM: 55.0
Min nTPM: 2.4
Std nTPM: 8.6
Median nTPM: 9.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 55.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 46.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 39.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 31.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 31.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 30.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 30.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 29.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 28.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 26.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 25.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.9
FF:10158-103A5 76 years, female 1.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.2
Pig sample Sample description nTPM
Midbrain
nTPM: 9.7
Samples: 4

Max nTPM: 12.3
Min nTPM: 8.0
Sample A Female 8.9
Sample B Female 8.0
Sample C Male 9.6
Sample D Male 12.3
Periaqueductal gray
nTPM: 9.8
Samples: 3

Max nTPM: 11.0
Min nTPM: 8.7
Sample B Female 9.6
Sample C Male 11.0
Sample D Male 8.7
Substantia nigra
nTPM: 8.6
Samples: 4

Max nTPM: 14.5
Min nTPM: 5.3
Sample A Female 14.5
Sample B Female 5.3
Sample C Male 8.1
Sample D Male 6.4
Superior colliculi
nTPM: 14.3
Samples: 4

Max nTPM: 18.1
Min nTPM: 10.6
Sample A Female 18.1
Sample B Female 10.6
Sample C Male 16.3
Sample D Male 12.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.5
Samples: 4

Max nTPM: 13.1
Min nTPM: 10.8
Sample A Male 13.1
Sample B Male 10.9
Sample C Female 11.0
Sample D Female 10.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71495765 Antisense, RP_050913_03_E09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.