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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:97.9 nTPM
HPA:97.9 nTPM
GTEx:144.6 nTPM
FANTOM5:406.3 Scaled Tags Per Million
Pig:350.2 nTPM
Mouse:622.2 nTPM
Allen mouse:31.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 97.9
Sample id Sample description nTPM
Amygdala
nTPM: 36.0
2517 Female, age 94, left hemisphere 49.3
2814 Male, age 76, right hemisphere 47.8
1987 Female, age 91, left hemisphere 43.3
2514 Male, age 75, right hemisphere 39.5
2695 Female, age 67, right hemisphere 0.0
Basal amygdala
nTPM: 74.9
2243 Female, age 91, right hemisphere 194.4
2685 Female, age 94, left hemisphere 81.6
2110 Male, age 80, left hemisphere 75.9
1955 Male, age 76, both hemispheres 50.6
2827 Female, age 67, right hemisphere 25.2
2609 Male, age 75, right hemisphere 21.8
Central amygdala
nTPM: 48.5
2239 Male, age 80, left hemisphere 87.1
2701 Female, age 91, right hemisphere 66.0
1905 Male, age 76, both hemispheres 39.8
2826 Female, age 94, left hemisphere 36.2
2515 Male, age 75, right hemisphere 13.2
Corticomedial amygdala
nTPM: 95.1
2242 Female, age 91, right hemisphere 168.3
2535 Female, age 67, right hemisphere 111.2
2429 Female, age 94, left hemisphere 103.3
2829 Male, age 80, left hemisphere 86.3
2240 Male, age 76, both hemispheres 75.9
2428 Male, age 75, right hemisphere 25.3
Lateral amygdala
nTPM: 37.8
2534 Female, age 94, left hemisphere 95.5
1883 Male, age 76, both hemispheres 59.7
2255 Female, age 91, right hemisphere 46.4
2256 Male, age 80, left hemisphere 18.8
2516 Male, age 75, right hemisphere 5.9
2830 Female, age 67, right hemisphere 0.3
Stria terminalis, bed nucleus
nTPM: 97.9
2486 Female, age 94, both hemispheres 138.3
1974 Female, age 91, both hemispheres 114.6
2201 Male, age 74, unknown 40.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 144.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 144.6
Samples: 152

Max nTPM: 400.1
Min nTPM: 6.6
Std nTPM: 73.4
Median nTPM: 135.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 400.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 380.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 363.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 358.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 300.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 298.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 297.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 284.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 283.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 282.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 264.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 261.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 238.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 233.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 232.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 229.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 228.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 227.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 226.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 224.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 220.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 219.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 215.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 210.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 207.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 202.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 200.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 200.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 197.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 197.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 197.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 194.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 193.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 193.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 191.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 190.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 189.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 189.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 186.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 186.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 184.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 180.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 179.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 178.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 178.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 177.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 176.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 172.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 171.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 169.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 169.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 169.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 169.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 166.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 164.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 164.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 159.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 157.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 155.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 154.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 152.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 151.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 149.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 144.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 144.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 144.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 142.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 141.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 140.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 139.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 137.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 135.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 135.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 135.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 135.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 135.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 134.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 131.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 131.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 130.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 129.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 127.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 126.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 125.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 122.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 122.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 121.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 118.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 116.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 116.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 116.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 115.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 115.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 115.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 114.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 113.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 111.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 110.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 110.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 108.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 108.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 108.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 105.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 105.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 104.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 104.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 103.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 102.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 98.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 95.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 95.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 95.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 94.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 94.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 93.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 92.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 92.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 92.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 90.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 89.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 89.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 86.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 83.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 83.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 82.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 81.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 81.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 81.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 76.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 75.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 72.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 71.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 69.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 68.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 63.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 62.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 60.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 58.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 58.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 52.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 52.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 50.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 49.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 48.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 45.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 36.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 30.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 30.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 24.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 24.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 7.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 6.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 406.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 406.3
FF:10151-102I7 76 years, female 406.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 350.2
Pig sample Sample description nTPM
Amygdala
nTPM: 350.3
Samples: 4

Max nTPM: 572.3
Min nTPM: 208.1
Sample A Female 572.3
Sample B Female 208.1
Sample C Male 302.5
Sample D Male 318.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 622.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 622.2
Samples: 4

Max nTPM: 655.6
Min nTPM: 593.1
Sample A Male 655.6
Sample B Male 612.7
Sample C Female 627.5
Sample D Female 593.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 31.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 31.4
68798025 Antisense, RP_050215_01_F04, Mouse strain C57BL/6J (56 days, male) 31.4

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