HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:92.5 nTPM
HPA:92.5 nTPM
GTEx:95.9 nTPM
FANTOM5:68.4 Scaled Tags Per Million
Pig:32.4 nTPM
Mouse:190.7 nTPM
Allen mouse:2.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 92.5
Sample id Sample description nTPM
Hippocampus
nTPM: 86.4
1855 Male, age 76, left hemisphere 90.6
1898 Male, age 80, left hemisphere 87.6
2148 Female, age 91, left hemisphere 87.3
1911 Female, age 85, right hemisphere 86.5
2621 Female, age 67, right hemisphere 84.0
2529 Female, age 94, left hemisphere 82.6
Dentate gyrus
nTPM: 88.8
1927 Female, age 91, both hemispheres 93.3
2531 Female, age 67, both hemispheres 91.9
2528 Male, age 74, both hemispheres 89.6
2010 Male, age 76, both hemispheres 88.6
2246 Female, age 85, both hemispheres 86.0
2530 Female, age 94, left hemisphere 83.4
Entorhinal gyrus
nTPM: 85.1
2613 Female, age 94, left hemisphere 89.5
1938 Female, age 85, left hemisphere 87.2
2764 Male, age 80, right hemisphere 85.7
2686 Male, age 75, right hemisphere 84.5
1787 Male, age 76, left hemisphere 84.0
2117 Female, age 91, right hemisphere 79.6
Hippocampus, CA1
nTPM: 90.4
2749 Male, age 80, left hemisphere 98.0
2045 Male, age 76, both hemispheres 92.3
1873 Female, age 85, both hemispheres 91.8
2527 Male, age 74, both hemispheres 86.7
2082 Female, age 91, right hemisphere 83.1
Hippocampus, CA2
nTPM: 87.6
1892 Male, age 76, both hemispheres 95.2
1963 Male, age 80, left hemisphere 94.0
2249 Male, age 74, both hemispheres 86.1
2113 Female, age 91, right hemisphere 83.9
2437 Female, age 94, left hemisphere 83.7
1940 Female, age 85, left hemisphere 82.8
Hippocampus, CA3
nTPM: 89.2
2137 Male, age 80, left hemisphere 94.4
1867 Male, age 76, both hemispheres 90.4
2620 Female, age 94, left hemisphere 89.1
2436 Male, age 74, both hemispheres 87.9
1891 Female, age 85, both hemispheres 87.6
2861 Female, age 67, both hemispheres 85.7
Parahippocampal cortex
nTPM: 88.1
2693 Female, age 94, both hemispheres 93.3
1850 Male, age 80, both hemispheres 92.7
1933 Female, age 85, both hemispheres 89.7
2250 Female, age 67, right hemisphere 88.1
2692 Male, age 74, both hemispheres 88.1
1990 Female, age 91, right hemisphere 86.7
2532 Female, age 72, left hemisphere 86.4
2018 Male, age 76, both hemispheres 85.3
2622 Female, age 67, right hemisphere 85.3
2245 Female, age 91, both hemispheres 85.2
Perirhinal gyrus
nTPM: 92.5
1841 Female, age 85, right hemisphere 97.2
1847 Female, age 91, left hemisphere 94.1
1794 Male, age 80, right hemisphere 93.8
2521 Female, age 94, right hemisphere 89.4
2848 Male, age 76, right hemisphere 87.8
Subiculum
nTPM: 85.1
1901 Male, age 80, both hemispheres 87.3
1977 Female, age 85, both hemispheres 87.3
2729 Female, age 91, right hemisphere 85.8
2619 Male, age 74, both hemispheres 85.1
2042 Male, age 76, both hemispheres 82.7
2438 Female, age 94, left hemisphere 82.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 95.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 95.9
Samples: 197

Max nTPM: 300.4
Min nTPM: 46.7
Std nTPM: 27.8
Median nTPM: 92.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 300.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 179.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 172.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 162.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 161.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 158.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 150.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 146.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 139.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 135.8
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 133.0
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 68.4
FF:10169-103B7 60 years, female 89.9
FF:10153-102I9 76 years, female 46.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 32.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 32.4
Samples: 4

Max nTPM: 39.1
Min nTPM: 28.0
Sample A Female 39.1
Sample B Female 31.5
Sample C Male 30.9
Sample D Male 28.0
Entorhinal cortex
nTPM: 31.9
Samples: 4

Max nTPM: 35.1
Min nTPM: 28.5
Sample A Female 34.1
Sample B Female 35.1
Sample C Male 29.7
Sample D Male 28.5
Subiculum
nTPM: 29.6
Samples: 4

Max nTPM: 34.4
Min nTPM: 26.5
Sample A Female 34.4
Sample B Female 28.8
Sample C Male 26.5
Sample D Male 28.7
Ventral hippocampus
nTPM: 28.2
Samples: 4

Max nTPM: 32.1
Min nTPM: 25.0
Sample A Female 32.1
Sample B Female 25.0
Sample C Male 26.8
Sample D Male 28.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 190.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 182.2
Samples: 4

Max nTPM: 184.8
Min nTPM: 175.4
Sample A Male 184.6
Sample B Male 183.8
Sample C Female 184.8
Sample D Female 175.4
Hippocampal formation
nTPM: 190.8
Samples: 4

Max nTPM: 239.6
Min nTPM: 167.0
Sample A Male 239.6
Sample B Male 177.8
Sample C Female 178.6
Sample D Female 167.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.6
68744564 Antisense, RP_050208_01_B07, Mouse strain C57BL/6J (56 days, male) 2.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.