BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:21.5 nTPM
HPA:21.5 nTPM
GTEx:22.4 nTPM
FANTOM5:87.1 Scaled Tags Per Million
Pig:38.7 nTPM
Mouse:36.9 nTPM
Allen mouse:0.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 18.2
2481 Female, age 94, left hemisphere 23.0
1857 Female, age 85, left hemisphere 19.9
2288 Male, age 75, left hemisphere 19.4
1854 Male, age 80, left hemisphere 18.4
2289 Male, age 61, right hemisphere 18.3
2290 Female, age 72, unknown 18.1
2846 Female, age 79, unknown 15.9
1781 Male, age 74, unknown 12.4
Claustrum
nTPM: 12.8
2196 Female, age 79, unknown 13.6
2568 Male, age 61, both hemispheres 13.6
2392 Female, age 94, both hemispheres 13.5
2645 Female, age 72, unknown 13.4
1956 Male, age 74, unknown 12.9
2284 Female, age 91, both hemispheres 12.7
2292 Female, age 85, both hemispheres 12.1
2491 Male, age 75, both hemispheres 12.0
2198 Male, age 80, both hemispheres 11.7
Globus pallidus, externus
nTPM: 21.5
1996 Male, age 80, right hemisphere 27.6
2646 Male, age 61, right hemisphere 24.1
2772 Female, age 79, unknown 22.1
2395 Male, age 75, both hemispheres 18.6
2567 Female, age 72, unknown 15.0
Globus pallidus, internus
nTPM: 20.6
2037 Male, age 80, right hemisphere 25.6
2483 Female, age 94, right hemisphere 23.7
1818 Male, age 74, unknown 23.0
2287 Male, age 75, right hemisphere 21.3
2778 Female, age 91, both hemispheres 19.6
2111 Female, age 85, right hemisphere 16.0
2566 Female, age 72, unknown 14.7
Nucleus accumbens
nTPM: 15.7
1806 Female, age 85, left hemisphere 18.0
2286 Male, age 75, left hemisphere 18.0
1856 Female, age 91, right hemisphere 17.3
2391 Female, age 94, left hemisphere 17.1
2698 Female, age 72, unknown 16.0
2732 Male, age 80, right hemisphere 13.8
2824 Male, age 61, right hemisphere 13.1
1783 Male, age 74, unknown 12.5
Nucleus basalis of Meynert
nTPM: 20.4
2569 Male, age 61, both hemispheres 27.4
2484 Female, age 94, left hemisphere 19.2
2393 Male, age 80, right hemisphere 18.7
2821 Male, age 75, both hemispheres 16.3
Nucleus of the diagonal band
nTPM: 13.6
1979 Male, age 74, unknown 17.7
1812 Female, age 91, both hemispheres 14.1
2195 Female, age 85, both hemispheres 13.4
2029 Male, age 61, right hemisphere 11.6
2775 Male, age 80, right hemisphere 11.0
Olfactory tubercle
nTPM: 12.1
2856 Male, age 75, right hemisphere 14.4
1846 Male, age 80, right hemisphere 12.2
1998 Female, age 91, both hemispheres 11.7
2487 Female, age 94, left hemisphere 10.3
Putamen
nTPM: 17.7
2482 Female, age 94, left hemisphere 20.2
1838 Male, age 80, right hemisphere 18.9
2489 Female, age 72, unknown 18.3
1829 Male, age 74, unknown 17.9
1937 Female, age 91, right hemisphere 17.8
2466 Female, age 79, unknown 15.7
2647 Male, age 75, left hemisphere 15.3
Septal nuclei
nTPM: 14.4
2199 Male, age 80, right hemisphere 21.3
2394 Male, age 61, left hemisphere 14.9
2059 Female, age 85, both hemispheres 14.7
2009 Female, age 91, both hemispheres 13.5
2629 Female, age 94, right hemisphere 12.8
2031 Female, age 72, unknown 12.2
1960 Male, age 74, unknown 11.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 22.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.6
Samples: 246

Max nTPM: 49.1
Min nTPM: 6.6
Std nTPM: 6.0
Median nTPM: 19.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 49.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 37.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 36.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 36.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 35.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 34.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 32.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 32.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 31.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 31.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 31.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 15.3
Samples: 246

Max nTPM: 38.8
Min nTPM: 7.6
Std nTPM: 4.8
Median nTPM: 14.5
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 38.8
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 34.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 31.1
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 30.2
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 29.4
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 28.3
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 27.6
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 27.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 25.1
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 24.9
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 24.9
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Brain - Putamen (basal ganglia)
Average nTPM: 22.4
Samples: 205

Max nTPM: 53.4
Min nTPM: 5.8
Std nTPM: 8.7
Median nTPM: 20.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 53.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 50.5
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 48.5
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 44.7
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 42.9
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 42.2
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 41.4
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 40.9
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 40.4
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 39.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 38.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 68.6
FF:10164-103B2 76 years, female 68.6
Globus pallidus
Scaled Tags Per Million: 87.1
FF:10175-103C4 60 years, female 108.1
FF:10161-103A8 76 years, female 66.1
Nucleus accumbens
Scaled Tags Per Million: 68.1
FF:10037-101F1 23-56 years, mixed 68.1
Putamen
Scaled Tags Per Million: 50.4
FF:10176-103C5 60 years, female 50.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 38.7
Pig sample Sample description nTPM
Caudate
nTPM: 30.0
Samples: 4

Max nTPM: 36.0
Min nTPM: 26.2
Sample A Female 26.2
Sample B Female 28.9
Sample C Male 36.0
Sample D Male 28.7
Putamen
nTPM: 38.7
Samples: 4

Max nTPM: 49.9
Min nTPM: 30.5
Sample A Female 40.4
Sample B Female 30.5
Sample C Male 49.9
Sample D Male 34.1
Septum
nTPM: 34.7
Samples: 4

Max nTPM: 41.7
Min nTPM: 29.1
Sample A Female 33.2
Sample B Female 29.1
Sample C Male 34.6
Sample D Male 41.7
Ventral pallidum
nTPM: 30.3
Samples: 4

Max nTPM: 31.5
Min nTPM: 27.7
Sample A Female 31.5
Sample B Female 31.1
Sample C Male 30.9
Sample D Male 27.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 36.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 33.8
Samples: 4

Max nTPM: 37.1
Min nTPM: 30.4
Sample A Male 31.5
Sample B Male 30.4
Sample C Female 36.2
Sample D Female 37.1
Septum
nTPM: 36.9
Samples: 4

Max nTPM: 38.9
Min nTPM: 33.0
Sample A Male 33.0
Sample B Male 38.9
Sample C Female 37.4
Sample D Female 38.1
Ventral forebrain
nTPM: 34.6
Samples: 4

Max nTPM: 35.7
Min nTPM: 33.7
Sample A Male 35.1
Sample B Male 33.7
Sample C Female 35.7
Sample D Female 33.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
1220 Antisense, RP_Baylor_253928, Mouse strain C57BL/6J (56 days, male) 1.1
603 Antisense, RP_Baylor_253927, Mouse strain C57BL/6J (56 days, male) 0.0
602 Antisense, RP_Baylor_253927, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.9
1220 Antisense, RP_Baylor_253928, Mouse strain C57BL/6J (56 days, male) 1.7
603 Antisense, RP_Baylor_253927, Mouse strain C57BL/6J (56 days, male) 0.1
602 Antisense, RP_Baylor_253927, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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