BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:3.9 nTPM
HPA:3.9 nTPM
GTEx:12.7 nTPM
FANTOM5:13.5 Scaled Tags Per Million
Pig:5.7 nTPM
Mouse:13.2 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA027120Antibody HPA027125Antibody HPA027268
Glial cells Not detectedLowNot detected
Neuronal cells Not detectedLowNot detected







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.7
1854 Male, age 80, left hemisphere 3.8
2289 Male, age 61, right hemisphere 3.8
2290 Female, age 72, unknown 3.8
2846 Female, age 79, unknown 3.8
1857 Female, age 85, left hemisphere 3.7
2288 Male, age 75, left hemisphere 3.6
2481 Female, age 94, left hemisphere 3.6
1781 Male, age 74, unknown 3.5
Claustrum
nTPM: 3.4
2491 Male, age 75, both hemispheres 3.6
2392 Female, age 94, both hemispheres 3.5
2568 Male, age 61, both hemispheres 3.5
2645 Female, age 72, unknown 3.5
1956 Male, age 74, unknown 3.4
2196 Female, age 79, unknown 3.4
2198 Male, age 80, both hemispheres 3.3
2292 Female, age 85, both hemispheres 3.3
2284 Female, age 91, both hemispheres 3.1
Globus pallidus, externus
nTPM: 3.3
1996 Male, age 80, right hemisphere 3.6
2646 Male, age 61, right hemisphere 3.4
2772 Female, age 79, unknown 3.3
2395 Male, age 75, both hemispheres 3.2
2567 Female, age 72, unknown 3.2
Globus pallidus, internus
nTPM: 3.3
2566 Female, age 72, unknown 3.7
2287 Male, age 75, right hemisphere 3.5
2483 Female, age 94, right hemisphere 3.5
1818 Male, age 74, unknown 3.2
2037 Male, age 80, right hemisphere 3.2
2778 Female, age 91, both hemispheres 3.2
2111 Female, age 85, right hemisphere 3.1
Nucleus accumbens
nTPM: 3.9
1856 Female, age 91, right hemisphere 4.6
2824 Male, age 61, right hemisphere 4.6
1783 Male, age 74, unknown 3.8
2391 Female, age 94, left hemisphere 3.7
2698 Female, age 72, unknown 3.7
1806 Female, age 85, left hemisphere 3.6
2286 Male, age 75, left hemisphere 3.6
2732 Male, age 80, right hemisphere 3.5
Nucleus basalis of Meynert
nTPM: 3.7
2393 Male, age 80, right hemisphere 4.2
2484 Female, age 94, left hemisphere 3.7
2821 Male, age 75, both hemispheres 3.6
2569 Male, age 61, both hemispheres 3.4
Nucleus of the diagonal band
nTPM: 3.5
2029 Male, age 61, right hemisphere 3.9
1979 Male, age 74, unknown 3.7
2195 Female, age 85, both hemispheres 3.4
2775 Male, age 80, right hemisphere 3.4
1812 Female, age 91, both hemispheres 3.2
Olfactory tubercle
nTPM: 3.4
1998 Female, age 91, both hemispheres 3.6
2856 Male, age 75, right hemisphere 3.6
1846 Male, age 80, right hemisphere 3.4
2487 Female, age 94, left hemisphere 3.1
Putamen
nTPM: 3.9
1838 Male, age 80, right hemisphere 4.8
1829 Male, age 74, unknown 4.0
2466 Female, age 79, unknown 4.0
1937 Female, age 91, right hemisphere 3.9
2482 Female, age 94, left hemisphere 3.6
2489 Female, age 72, unknown 3.5
2647 Male, age 75, left hemisphere 3.3
Septal nuclei
nTPM: 3.4
2059 Female, age 85, both hemispheres 3.7
1960 Male, age 74, unknown 3.4
2031 Female, age 72, unknown 3.4
2199 Male, age 80, right hemisphere 3.4
2394 Male, age 61, left hemisphere 3.4
2629 Female, age 94, right hemisphere 3.4
2009 Female, age 91, both hemispheres 3.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.5
Samples: 246

Max nTPM: 17.1
Min nTPM: 6.7
Std nTPM: 1.9
Median nTPM: 11.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 17.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 16.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 16.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 16.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 15.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 15.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 15.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 15.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 15.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 15.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 15.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.7
Samples: 246

Max nTPM: 20.7
Min nTPM: 6.5
Std nTPM: 2.4
Median nTPM: 12.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 20.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 20.0
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 19.1
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 18.9
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 18.8
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 18.3
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 18.2
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 17.9
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 17.8
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 17.8
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 17.7
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Brain - Putamen (basal ganglia)
Average nTPM: 12.2
Samples: 205

Max nTPM: 18.3
Min nTPM: 5.1
Std nTPM: 2.4
Median nTPM: 12.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 18.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 17.8
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 17.8
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 17.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 17.5
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 17.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 17.4
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 17.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 16.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 16.4
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 16.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 8.4
FF:10164-103B2 76 years, female 8.4
Globus pallidus
Scaled Tags Per Million: 6.3
FF:10175-103C4 60 years, female 6.3
FF:10161-103A8 76 years, female 6.3
Nucleus accumbens
Scaled Tags Per Million: 10.5
FF:10037-101F1 23-56 years, mixed 10.5
Putamen
Scaled Tags Per Million: 13.5
FF:10176-103C5 60 years, female 13.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.7
Pig sample Sample description nTPM
Caudate
nTPM: 5.7
Samples: 4

Max nTPM: 6.3
Min nTPM: 4.8
Sample A Female 6.1
Sample B Female 5.5
Sample C Male 4.8
Sample D Male 6.3
Putamen
nTPM: 5.5
Samples: 4

Max nTPM: 6.5
Min nTPM: 4.3
Sample A Female 5.3
Sample B Female 6.5
Sample C Male 4.3
Sample D Male 5.7
Septum
nTPM: 5.6
Samples: 4

Max nTPM: 5.9
Min nTPM: 5.0
Sample A Female 5.6
Sample B Female 5.9
Sample C Male 5.0
Sample D Male 5.8
Ventral pallidum
nTPM: 5.7
Samples: 4

Max nTPM: 6.5
Min nTPM: 4.7
Sample A Female 6.5
Sample B Female 6.0
Sample C Male 4.7
Sample D Male 5.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 13.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 11.2
Samples: 4

Max nTPM: 11.6
Min nTPM: 10.8
Sample A Male 11.4
Sample B Male 10.9
Sample C Female 11.6
Sample D Female 10.8
Septum
nTPM: 9.7
Samples: 4

Max nTPM: 11.1
Min nTPM: 8.9
Sample A Male 11.1
Sample B Male 8.9
Sample C Female 9.0
Sample D Female 9.7
Ventral forebrain
nTPM: 13.3
Samples: 4

Max nTPM: 14.3
Min nTPM: 12.5
Sample A Male 13.3
Sample B Male 12.9
Sample C Female 12.5
Sample D Female 14.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
69262153 Antisense, RP_050224_01_B08, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
69262153 Antisense, RP_050224_01_B08, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

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