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TISSUE RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:251.6 nTPM
GTEx:251.6 nTPM
FANTOM5:22.0 Scaled Tags Per Million
Pig:122.0 nTPM
Mouse:428.7 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 251.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 251.6
Samples: 105

Max nTPM: 396.6
Min nTPM: 111.2
Std nTPM: 54.9
Median nTPM:
6_1 73 years, female 396.6
319_1 81 years, male 394.0
352_1 62 years, male 387.6
375_1 74 years, female 349.8
316_1 62 years, male 345.1
126_1 63 years, male 326.9
354_1 81 years, female 325.1
35_1 74 years, female 322.9
237_1 82 years, male 322.9
243_1 75 years, male 312.8
217_1 76 years, male 312.6
229_1 69 years, female 311.1
386_1 76 years, male 311.0
425_1 59 years, female 309.4
389_1 86 years, female 308.8
405_1 91 years, male 308.2
246_1 77 years, male 306.1
468_1 89 years, male 305.8
153_1 70 years, female 305.0
347_1 72 years, male 297.3
115_1 83 years, male 296.7
377_1 82 years, female 296.5
218_1 71 years, female 295.1
396_1 62 years, male 294.6
163_1 78 years, male 293.9
162_1 79 years, female 290.9
379_1 60 years, male 288.1
355_1 70 years, female 286.6
172_1 72 years, female 286.0
480_1 63 years, male 285.2
406_1 79 years, male 279.2
99_1 64 years, male 278.6
415_1 77 years, female 278.5
142_1 61 years, female 277.5
189_1 76 years, male 277.0
321_1 62 years, female 275.2
9_1 66 years, female 274.8
17_1 71 years, male 272.6
526_1 61 years, male 271.6
18_1 88 years, male 267.3
335_1 73 years, female 266.5
177_1 74 years, male 265.4
518_1 75 years, female 264.2
286_1 68 years, female 264.1
320_1 89 years, female 263.4
137_1 83 years, male 261.9
32_1 67 years, male 261.4
503_1 68 years, male 261.1
349_1 83 years, male 259.2
350_1 84 years, female 258.6
404_1 82 years, female 258.5
394_1 75 years, female 257.3
376_1 75 years, female 256.6
414_1 84 years, female 254.9
318_1 68 years, male 254.2
4_1 88 years, female 253.1
42_1 85 years, male 252.7
384_1 83 years, male 251.9
447_1 81 years, male 251.9
490_1 67 years, female 248.8
81_1 67 years, male 244.4
265_1 87 years, male 244.3
356_1 87 years, female 241.5
2_1 77 years, female 240.3
145_1 84 years, male 240.0
466_1 57 years, female 236.9
322_1 76 years, male 236.7
117_1 61 years, male 234.1
348_1 84 years, male 232.9
324_1 76 years, male 231.6
43_1 64 years, female 231.4
251_1 78 years, male 230.5
266_1 85 years, male 228.7
517_1 88 years, male 226.4
292_1 71 years, male 223.9
254_1 77 years, female 223.1
291_1 76 years, male 219.6
351_1 91 years, male 215.3
315_1 62 years, female 207.6
139_1 64 years, female 206.9
353_1 82 years, female 205.9
120_1 70 years, female 200.2
109_1 81 years, female 194.7
173_1 67 years, male 193.4
499_1 55 years, female 193.4
293_1 68 years, female 193.0
307_1 66 years, female 192.8
413_1 59 years, female 188.8
264_1 73 years, female 188.1
506_1 65 years, male 186.8
313_1 79 years, female 186.3
149_1 88 years, male 183.3
491_1 89 years, female 181.0
295_1 61 years, female 178.2
311_1 78 years, male 175.3
119_1 70 years, female 173.5
89_1 63 years, male 170.7
288_1 66 years, female 170.2
501_1 88 years, male 169.8
452_1 88 years, female 167.3
317_1 60 years, male 165.8
314_1 67 years, male 162.4
495_1 57 years, female 158.8
41_1 94 years, female 144.0
308_1 70 years, female 111.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 22.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 22.0
FF:10030-101E3 24-65 years, mixed 22.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 122.0
Pig sample Sample description nTPM
Retina
nTPM: 122.0
Samples: 4

Max nTPM: 149.0
Min nTPM: 104.2
Sample A Female 111.0
Sample B Female 149.0
Sample C Male 123.7
Sample D Male 104.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 428.7
Mouse sample Sample description nTPM
Retina
nTPM: 428.8
Samples: 4

Max nTPM: 441.3
Min nTPM: 415.9
Sample A Male 441.3
Sample B Male 431.1
Sample C Female 415.9
Sample D Female 426.7

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by the Knut & Alice Wallenberg Foundation.