MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:29.1 nTPM
HPA:29.1 nTPM
GTEx:34.6 nTPM
FANTOM5:52.1 Scaled Tags Per Million
Pig:65.2 nTPM
Mouse:34.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.8
2019 Male, age 18, unknown 35.5
1827 Male, age 72, unknown 28.2
2411 Female, age 72, unknown 27.9
2586 Male, age 75, left hemisphere 27.7
2666 Male, age 74, left hemisphere 27.1
2828 Female, age 72, unknown 26.9
2219 Male, age 76, both hemispheres 26.6
1870 Female, age 42, unknown 26.3
1833 Male, age 53, unknown 26.1
1830 Male, age 51, unknown 25.9
Dorsal raphe nucleus
nTPM: 28.1
1828 Male, age 53, unknown 30.5
2047 Male, age 72, unknown 28.7
2298 Female, age 72, unknown 27.6
2750 Male, age 76, both hemispheres 26.9
2016 Female, age 72, unknown 26.8
Inferior colliculus
nTPM: 27.9
1890 Male, age 53, unknown 28.5
2097 Female, age 72, unknown 28.4
1848 Female, age 42, unknown 27.8
2849 Male, age 72, unknown 26.8
Median raphe nucleus
nTPM: 26.1
2220 Male, age 76, midline 26.1
Pedunculopontine tegmental nucleus
nTPM: 27.8
2338 Male, age 61, both hemispheres 29.3
2334 Male, age 80, both hemispheres 27.8
1921 Female, age 85, both hemispheres 26.3
Periaquaductal grey, anterior
nTPM: 26.5
1795 Male, age 51, unknown 27.0
2502 Female, age 75, unknown 26.4
1947 Male, age 18, unknown 26.0
Periaquaductal grey, dorsal
nTPM: 26.2
2850 Male, age 76, both hemispheres 27.5
1840 Male, age 53, unknown 25.9
2464 Female, age 72, unknown 25.9
1831 Male, age 72, unknown 25.6
Periaquaductal grey, lateral
nTPM: 26.5
2272 Male, age 74, both hemispheres 28.3
2140 Male, age 76, both hemispheres 25.9
2053 Male, age 18, unknown 25.2
Pretectal area
nTPM: 28.6
1817 Female, age 42, unknown 35.1
2007 Male, age 72, unknown 32.4
1816 Male, age 51, unknown 30.4
1815 Male, age 53, unknown 29.5
2667 Female, age 75, unknown 28.8
1944 Female, age 72, unknown 27.4
2273 Male, age 74, both hemispheres 27.3
2407 Male, age 75, both hemispheres 26.7
2316 Male, age 76, right hemisphere 26.4
2224 Female, age 72, unknown 26.1
2825 Male, age 18, unknown 24.8
Red nucleus
nTPM: 28.5
2785 Male, age 18, unknown 31.9
1821 Female, age 72, unknown 31.1
2769 Male, age 72, unknown 28.8
2503 Female, age 72, unknown 28.6
2227 Male, age 72, unknown 28.0
2584 Male, age 75, left hemisphere 28.0
2823 Male, age 76, right hemisphere 27.9
2725 Female, age 75, unknown 27.8
1904 Male, age 53, unknown 27.7
1865 Male, age 51, unknown 27.6
2588 Male, age 74, left hemisphere 27.6
1954 Female, age 42, unknown 27.5
Substantia nigra
nTPM: 29.1
1916 Female, age 42, unknown 30.9
2590 Female, age 75, unknown 30.6
1851 Male, age 51, unknown 30.5
1889 Female, age 72, unknown 30.2
2665 Male, age 74, both hemispheres 30.0
2583 Male, age 75, right hemisphere 29.2
1941 Male, age 53, unknown 28.1
2409 Female, age 72, unknown 27.9
2699 Male, age 18, unknown 27.5
2241 Male, age 72, unknown 26.2
Superior colliculus
nTPM: 27.0
2587 Male, age 74, left hemisphere 28.7
1796 Male, age 53, unknown 28.3
2664 Male, age 75, both hemispheres 27.7
2087 Female, age 72, unknown 27.5
1995 Male, age 72, unknown 27.1
1839 Male, age 51, unknown 26.9
1895 Male, age 76, right hemisphere 26.6
2668 Female, age 75, unknown 26.0
1913 Female, age 42, unknown 25.9
2261 Male, age 18, unknown 25.1
Ventral tegmental area
nTPM: 27.5
2410 Female, age 72, unknown 29.8
2218 Male, age 76, both hemispheres 29.1
1915 Female, age 42, unknown 27.4
1942 Male, age 51, unknown 26.5
2223 Female, age 72, unknown 26.4
2021 Male, age 53, unknown 25.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.6
Samples: 139

Max nTPM: 68.7
Min nTPM: 15.5
Std nTPM: 8.7
Median nTPM: 33.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 68.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 66.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 65.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 59.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 54.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 51.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 50.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 50.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 50.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 49.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 49.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.1
FF:10158-103A5 76 years, female 52.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.2
Pig sample Sample description nTPM
Midbrain
nTPM: 60.7
Samples: 4

Max nTPM: 73.4
Min nTPM: 46.4
Sample A Female 64.8
Sample B Female 46.4
Sample C Male 73.4
Sample D Male 58.0
Periaqueductal gray
nTPM: 46.9
Samples: 3

Max nTPM: 50.2
Min nTPM: 42.8
Sample B Female 47.6
Sample C Male 50.2
Sample D Male 42.8
Substantia nigra
nTPM: 52.7
Samples: 4

Max nTPM: 65.7
Min nTPM: 41.5
Sample A Female 65.7
Sample B Female 41.5
Sample C Male 55.8
Sample D Male 47.6
Superior colliculi
nTPM: 65.2
Samples: 4

Max nTPM: 75.9
Min nTPM: 54.0
Sample A Female 68.3
Sample B Female 54.0
Sample C Male 75.9
Sample D Male 62.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.3
Samples: 4

Max nTPM: 35.7
Min nTPM: 32.2
Sample A Male 32.2
Sample B Male 33.9
Sample C Female 35.7
Sample D Female 35.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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