BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:36.5 nTPM
HPA:36.5 nTPM
GTEx:25.5 nTPM
FANTOM5:45.3 Scaled Tags Per Million
Pig:17.6 nTPM
Mouse:54.6 nTPM
Allen mouse:1.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA051398
Glial cells High
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.8
2481 Female, age 94, left hemisphere 35.9
2288 Male, age 75, left hemisphere 34.4
2846 Female, age 79, unknown 33.2
1781 Male, age 74, unknown 32.4
1854 Male, age 80, left hemisphere 32.4
1857 Female, age 85, left hemisphere 32.0
2290 Female, age 72, unknown 31.8
2289 Male, age 61, right hemisphere 30.7
Claustrum
nTPM: 33.3
2392 Female, age 94, both hemispheres 36.2
1956 Male, age 74, unknown 34.6
2292 Female, age 85, both hemispheres 34.2
2198 Male, age 80, both hemispheres 33.7
2196 Female, age 79, unknown 33.2
2491 Male, age 75, both hemispheres 32.6
2645 Female, age 72, unknown 32.1
2284 Female, age 91, both hemispheres 31.8
2568 Male, age 61, both hemispheres 31.8
Globus pallidus, externus
nTPM: 35.0
2395 Male, age 75, both hemispheres 37.3
2772 Female, age 79, unknown 37.2
1996 Male, age 80, right hemisphere 36.6
2567 Female, age 72, unknown 32.7
2646 Male, age 61, right hemisphere 31.1
Globus pallidus, internus
nTPM: 36.5
2287 Male, age 75, right hemisphere 39.4
2778 Female, age 91, both hemispheres 38.4
2111 Female, age 85, right hemisphere 37.0
2037 Male, age 80, right hemisphere 36.3
2483 Female, age 94, right hemisphere 35.7
1818 Male, age 74, unknown 35.1
2566 Female, age 72, unknown 33.6
Nucleus accumbens
nTPM: 32.5
2391 Female, age 94, left hemisphere 35.7
2286 Male, age 75, left hemisphere 34.0
1806 Female, age 85, left hemisphere 33.1
1783 Male, age 74, unknown 32.6
2698 Female, age 72, unknown 31.8
2732 Male, age 80, right hemisphere 31.5
2824 Male, age 61, right hemisphere 31.3
1856 Female, age 91, right hemisphere 30.1
Nucleus basalis of Meynert
nTPM: 34.4
2484 Female, age 94, left hemisphere 36.5
2821 Male, age 75, both hemispheres 36.2
2393 Male, age 80, right hemisphere 33.2
2569 Male, age 61, both hemispheres 31.7
Nucleus of the diagonal band
nTPM: 33.0
2029 Male, age 61, right hemisphere 35.1
2195 Female, age 85, both hemispheres 34.0
1812 Female, age 91, both hemispheres 32.7
1979 Male, age 74, unknown 31.7
2775 Male, age 80, right hemisphere 31.5
Olfactory tubercle
nTPM: 32.5
1846 Male, age 80, right hemisphere 33.8
1998 Female, age 91, both hemispheres 32.5
2856 Male, age 75, right hemisphere 32.1
2487 Female, age 94, left hemisphere 31.8
Putamen
nTPM: 32.6
2482 Female, age 94, left hemisphere 35.7
2466 Female, age 79, unknown 34.2
1937 Female, age 91, right hemisphere 32.3
2489 Female, age 72, unknown 32.1
1829 Male, age 74, unknown 31.7
2647 Male, age 75, left hemisphere 31.3
1838 Male, age 80, right hemisphere 31.2
Septal nuclei
nTPM: 33.1
2031 Female, age 72, unknown 34.5
2394 Male, age 61, left hemisphere 34.3
1960 Male, age 74, unknown 33.8
2059 Female, age 85, both hemispheres 33.3
2629 Female, age 94, right hemisphere 32.7
2199 Male, age 80, right hemisphere 32.0
2009 Female, age 91, both hemispheres 30.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.4
Samples: 246

Max nTPM: 60.2
Min nTPM: 14.5
Std nTPM: 6.4
Median nTPM: 22.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 60.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 47.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 46.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 45.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 42.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 40.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 39.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 39.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 38.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 38.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 38.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.4
Samples: 246

Max nTPM: 73.6
Min nTPM: 12.7
Std nTPM: 6.8
Median nTPM: 20.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 73.6
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 62.4
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 44.7
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 43.9
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 43.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 39.7
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 38.8
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 38.6
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 38.1
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 37.9
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 37.2
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Brain - Putamen (basal ganglia)
Average nTPM: 25.5
Samples: 205

Max nTPM: 77.4
Min nTPM: 15.0
Std nTPM: 8.5
Median nTPM: 23.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 77.4
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 61.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 59.9
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 55.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 51.2
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 46.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 45.4
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 45.2
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 44.7
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 44.1
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 43.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 41.0
FF:10164-103B2 76 years, female 41.0
Globus pallidus
Scaled Tags Per Million: 45.3
FF:10161-103A8 76 years, female 50.4
FF:10175-103C4 60 years, female 40.2
Nucleus accumbens
Scaled Tags Per Million: 31.4
FF:10037-101F1 23-56 years, mixed 31.4
Putamen
Scaled Tags Per Million: 29.7
FF:10176-103C5 60 years, female 29.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.6
Pig sample Sample description nTPM
Caudate
nTPM: 14.8
Samples: 4

Max nTPM: 16.2
Min nTPM: 13.4
Sample A Female 16.2
Sample B Female 14.7
Sample C Male 14.8
Sample D Male 13.4
Putamen
nTPM: 16.4
Samples: 4

Max nTPM: 19.1
Min nTPM: 13.7
Sample A Female 17.3
Sample B Female 13.7
Sample C Male 19.1
Sample D Male 15.5
Septum
nTPM: 17.7
Samples: 4

Max nTPM: 19.6
Min nTPM: 15.7
Sample A Female 18.5
Sample B Female 15.7
Sample C Male 19.6
Sample D Male 16.8
Ventral pallidum
nTPM: 15.5
Samples: 4

Max nTPM: 16.1
Min nTPM: 15.1
Sample A Female 15.1
Sample B Female 15.4
Sample C Male 15.3
Sample D Male 16.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 54.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 53.3
Samples: 4

Max nTPM: 57.8
Min nTPM: 49.9
Sample A Male 51.3
Sample B Male 49.9
Sample C Female 57.8
Sample D Female 54.3
Septum
nTPM: 52.5
Samples: 4

Max nTPM: 54.3
Min nTPM: 49.8
Sample A Male 49.8
Sample B Male 54.0
Sample C Female 54.3
Sample D Female 51.7
Ventral forebrain
nTPM: 54.6
Samples: 4

Max nTPM: 56.4
Min nTPM: 53.4
Sample A Male 53.9
Sample B Male 54.8
Sample C Female 53.4
Sample D Female 56.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.8
513467 Antisense, RP_040810_01_F08, Mouse strain C57BL/6J (56 days, male) 1.8
Pallidum
Expression energy: 1.6
513467 Antisense, RP_040810_01_F08, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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