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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:22.4 nTPM
HPA:22.4 nTPM
GTEx:60.7 nTPM
FANTOM5:40.4 Scaled Tags Per Million
Pig:0.9 nTPM
Mouse:0.9 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 22.4
Sample id Sample description nTPM
Amygdala
nTPM: 22.4
2514 Male, age 75, right hemisphere 29.5
1987 Female, age 91, left hemisphere 25.2
2517 Female, age 94, left hemisphere 24.0
2814 Male, age 76, right hemisphere 18.8
2695 Female, age 67, right hemisphere 14.5
Basal amygdala
nTPM: 20.2
2609 Male, age 75, right hemisphere 23.4
2110 Male, age 80, left hemisphere 23.1
1955 Male, age 76, both hemispheres 20.6
2685 Female, age 94, left hemisphere 19.6
2243 Female, age 91, right hemisphere 18.4
2827 Female, age 67, right hemisphere 16.0
Central amygdala
nTPM: 19.5
2239 Male, age 80, left hemisphere 22.2
1905 Male, age 76, both hemispheres 19.6
2701 Female, age 91, right hemisphere 19.6
2826 Female, age 94, left hemisphere 18.7
2515 Male, age 75, right hemisphere 17.4
Corticomedial amygdala
nTPM: 22.0
2429 Female, age 94, left hemisphere 26.6
2240 Male, age 76, both hemispheres 23.0
2242 Female, age 91, right hemisphere 22.0
2428 Male, age 75, right hemisphere 21.4
2829 Male, age 80, left hemisphere 20.4
2535 Female, age 67, right hemisphere 18.3
Lateral amygdala
nTPM: 21.3
2516 Male, age 75, right hemisphere 29.2
2255 Female, age 91, right hemisphere 26.1
2256 Male, age 80, left hemisphere 23.0
2534 Female, age 94, left hemisphere 18.8
1883 Male, age 76, both hemispheres 15.5
2830 Female, age 67, right hemisphere 15.3
Stria terminalis, bed nucleus
nTPM: 16.8
2486 Female, age 94, both hemispheres 18.8
1974 Female, age 91, both hemispheres 16.1
2201 Male, age 74, unknown 15.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 60.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 60.7
Samples: 152

Max nTPM: 307.0
Min nTPM: 1.6
Std nTPM: 49.6
Median nTPM: 50.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 307.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 281.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 246.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 160.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 153.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 149.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 146.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 144.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 138.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 132.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 131.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 129.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 129.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 128.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 123.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 121.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 121.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 118.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 114.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 113.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 104.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 103.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 102.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 100.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 98.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 97.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 97.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 96.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 96.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 96.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 95.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 94.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 90.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 88.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 86.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 85.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 84.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 82.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 82.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 80.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 79.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 78.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 78.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 77.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 75.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 75.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 75.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 73.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 73.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 72.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 72.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 72.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 71.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 70.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 69.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 68.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 67.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 67.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 66.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 64.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 63.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 61.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 61.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 61.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 60.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 60.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 59.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 59.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 58.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 57.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 56.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 54.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 54.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 54.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 52.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 51.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 50.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 50.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 50.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 48.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 47.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 46.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 46.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 46.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 45.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 45.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 44.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 43.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 42.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 42.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 41.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 39.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 38.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 37.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 37.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 36.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 36.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 36.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 35.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 34.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 33.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 33.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 33.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 32.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 29.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 29.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 28.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 27.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 27.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 27.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 26.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 25.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 24.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 24.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 23.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 22.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 22.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 20.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 19.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 18.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 18.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 17.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 17.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 17.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 17.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 17.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 16.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 15.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 14.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 14.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 12.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 12.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 12.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 11.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 11.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 11.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 10.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 9.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 8.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 7.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 7.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 6.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 6.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 5.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 5.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 5.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 4.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 4.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 4.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 3.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 40.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 40.4
FF:10151-102I7 76 years, female 40.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 0.9
Pig sample Sample description nTPM
Amygdala
nTPM: 0.9
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.7
Sample A Female 0.8
Sample B Female 0.7
Sample C Male 1.0
Sample D Male 1.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 0.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 0.9
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.8
Sample A Male 0.9
Sample B Male 0.8
Sample C Female 1.1
Sample D Female 0.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
79749606 Antisense, RP_071204_02_D08, Mouse strain C57BL/6J (56 days, male) 0.1
1112 Antisense, RP_Baylor_103147, Mouse strain C57BL/6J (56 days, male) 0.0
1111 Antisense, RP_Baylor_103147, Mouse strain C57BL/6J (56 days, male) 0.0
74511885 Antisense, RP_060117_02_C08, Mouse strain C57BL/6J (56 days, male) 0.0

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