BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:1.9 nTPM
HPA:1.9 nTPM
GTEx:2.8 nTPM
FANTOM5:14.1 Scaled Tags Per Million
Pig:21.0 nTPM
Mouse:53.6 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA024198
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.9
2289 Male, age 61, right hemisphere 2.2
2290 Female, age 72, unknown 2.2
1857 Female, age 85, left hemisphere 2.0
2481 Female, age 94, left hemisphere 2.0
1854 Male, age 80, left hemisphere 1.9
2288 Male, age 75, left hemisphere 1.9
1781 Male, age 74, unknown 1.6
2846 Female, age 79, unknown 1.4
Claustrum
nTPM: 1.3
1956 Male, age 74, unknown 1.5
2392 Female, age 94, both hemispheres 1.5
2491 Male, age 75, both hemispheres 1.5
2196 Female, age 79, unknown 1.3
2284 Female, age 91, both hemispheres 1.2
2568 Male, age 61, both hemispheres 1.2
2292 Female, age 85, both hemispheres 1.1
2645 Female, age 72, unknown 1.1
2198 Male, age 80, both hemispheres 0.9
Globus pallidus, externus
nTPM: 1.4
1996 Male, age 80, right hemisphere 2.0
2772 Female, age 79, unknown 1.6
2395 Male, age 75, both hemispheres 1.4
2646 Male, age 61, right hemisphere 1.1
2567 Female, age 72, unknown 0.9
Globus pallidus, internus
nTPM: 1.6
2037 Male, age 80, right hemisphere 1.8
2111 Female, age 85, right hemisphere 1.7
1818 Male, age 74, unknown 1.6
2287 Male, age 75, right hemisphere 1.6
2483 Female, age 94, right hemisphere 1.6
2778 Female, age 91, both hemispheres 1.6
2566 Female, age 72, unknown 1.1
Nucleus accumbens
nTPM: 1.8
2286 Male, age 75, left hemisphere 2.2
2732 Male, age 80, right hemisphere 2.2
1806 Female, age 85, left hemisphere 1.9
1856 Female, age 91, right hemisphere 1.8
2391 Female, age 94, left hemisphere 1.7
2698 Female, age 72, unknown 1.7
2824 Male, age 61, right hemisphere 1.7
1783 Male, age 74, unknown 1.6
Nucleus basalis of Meynert
nTPM: 1.3
2393 Male, age 80, right hemisphere 1.7
2484 Female, age 94, left hemisphere 1.3
2569 Male, age 61, both hemispheres 1.1
2821 Male, age 75, both hemispheres 1.1
Nucleus of the diagonal band
nTPM: 1.6
1979 Male, age 74, unknown 1.9
1812 Female, age 91, both hemispheres 1.7
2029 Male, age 61, right hemisphere 1.5
2195 Female, age 85, both hemispheres 1.3
2775 Male, age 80, right hemisphere 1.3
Olfactory tubercle
nTPM: 1.6
2487 Female, age 94, left hemisphere 1.9
2856 Male, age 75, right hemisphere 1.7
1846 Male, age 80, right hemisphere 1.6
1998 Female, age 91, both hemispheres 1.3
Putamen
nTPM: 1.5
1829 Male, age 74, unknown 1.8
1838 Male, age 80, right hemisphere 1.8
2482 Female, age 94, left hemisphere 1.7
1937 Female, age 91, right hemisphere 1.6
2466 Female, age 79, unknown 1.4
2489 Female, age 72, unknown 1.2
2647 Male, age 75, left hemisphere 1.1
Septal nuclei
nTPM: 1.8
2199 Male, age 80, right hemisphere 2.5
2629 Female, age 94, right hemisphere 2.3
2009 Female, age 91, both hemispheres 2.2
2031 Female, age 72, unknown 1.6
2394 Male, age 61, left hemisphere 1.4
2059 Female, age 85, both hemispheres 1.3
1960 Male, age 74, unknown 1.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 2.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.8
Samples: 246

Max nTPM: 7.7
Min nTPM: 1.2
Std nTPM: 0.9
Median nTPM: 2.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 7.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 7.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 7.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 6.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 6.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 6.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 5.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 5.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 5.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 5.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 4.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.5
Samples: 246

Max nTPM: 8.6
Min nTPM: 0.6
Std nTPM: 0.8
Median nTPM: 2.4
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 8.6
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 6.8
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 6.4
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 5.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 4.8
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 4.7
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 4.4
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 4.3
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 4.2
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 4.1
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 4.1
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Brain - Putamen (basal ganglia)
Average nTPM: 2.1
Samples: 205

Max nTPM: 3.9
Min nTPM: 0.8
Std nTPM: 0.5
Median nTPM: 2.0
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 3.9
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 3.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 3.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 3.6
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 3.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 3.3
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 3.1
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 3.1
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 3.0
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 3.0
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 2.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 12.7
FF:10164-103B2 76 years, female 12.7
Globus pallidus
Scaled Tags Per Million: 11.5
FF:10175-103C4 60 years, female 13.4
FF:10161-103A8 76 years, female 9.7
Nucleus accumbens
Scaled Tags Per Million: 9.8
FF:10037-101F1 23-56 years, mixed 9.8
Putamen
Scaled Tags Per Million: 14.1
FF:10176-103C5 60 years, female 14.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 21.0
Pig sample Sample description nTPM
Caudate
nTPM: 20.2
Samples: 4

Max nTPM: 22.2
Min nTPM: 17.6
Sample A Female 22.2
Sample B Female 20.3
Sample C Male 20.7
Sample D Male 17.6
Putamen
nTPM: 19.6
Samples: 4

Max nTPM: 24.1
Min nTPM: 17.0
Sample A Female 18.3
Sample B Female 19.1
Sample C Male 24.1
Sample D Male 17.0
Septum
nTPM: 21.0
Samples: 4

Max nTPM: 22.3
Min nTPM: 20.2
Sample A Female 22.3
Sample B Female 20.2
Sample C Male 20.5
Sample D Male 20.9
Ventral pallidum
nTPM: 18.2
Samples: 4

Max nTPM: 22.2
Min nTPM: 14.4
Sample A Female 22.2
Sample B Female 18.8
Sample C Male 14.4
Sample D Male 17.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 53.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 34.4
Samples: 4

Max nTPM: 35.5
Min nTPM: 32.1
Sample A Male 35.3
Sample B Male 35.5
Sample C Female 34.6
Sample D Female 32.1
Septum
nTPM: 53.6
Samples: 4

Max nTPM: 58.6
Min nTPM: 47.5
Sample A Male 47.5
Sample B Male 54.8
Sample C Female 53.5
Sample D Female 58.6
Ventral forebrain
nTPM: 36.2
Samples: 4

Max nTPM: 37.0
Min nTPM: 35.2
Sample A Male 36.7
Sample B Male 35.2
Sample C Female 37.0
Sample D Female 35.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
68745060 Antisense, RP_050210_01_B10, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
68745060 Antisense, RP_050210_01_B10, Mouse strain C57BL/6J (56 days, male) 0.1

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