MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:88.1 nTPM
HPA:88.1 nTPM
GTEx:63.1 nTPM
FANTOM5:94.0 Scaled Tags Per Million
Pig:21.1 nTPM
Mouse:5.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 88.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.3
2666 Male, age 74, left hemisphere 84.4
2586 Male, age 75, left hemisphere 83.8
2828 Female, age 72, unknown 81.6
1827 Male, age 72, unknown 80.8
1870 Female, age 42, unknown 79.1
1833 Male, age 53, unknown 76.8
2411 Female, age 72, unknown 76.3
2019 Male, age 18, unknown 75.8
1830 Male, age 51, unknown 74.3
2219 Male, age 76, both hemispheres 70.4
Dorsal raphe nucleus
nTPM: 84.6
1828 Male, age 53, unknown 87.7
2047 Male, age 72, unknown 85.5
2298 Female, age 72, unknown 85.3
2016 Female, age 72, unknown 82.8
2750 Male, age 76, both hemispheres 81.6
Inferior colliculus
nTPM: 77.6
1848 Female, age 42, unknown 80.7
2097 Female, age 72, unknown 77.4
2849 Male, age 72, unknown 77.3
1890 Male, age 53, unknown 75.2
Median raphe nucleus
nTPM: 88.1
2220 Male, age 76, midline 88.1
Pedunculopontine tegmental nucleus
nTPM: 85.2
2338 Male, age 61, both hemispheres 91.5
2334 Male, age 80, both hemispheres 85.1
1921 Female, age 85, both hemispheres 79.0
Periaquaductal grey, anterior
nTPM: 83.2
1947 Male, age 18, unknown 84.1
1795 Male, age 51, unknown 84.0
2502 Female, age 75, unknown 81.5
Periaquaductal grey, dorsal
nTPM: 82.8
2850 Male, age 76, both hemispheres 88.7
1840 Male, age 53, unknown 81.8
1831 Male, age 72, unknown 81.1
2464 Female, age 72, unknown 79.7
Periaquaductal grey, lateral
nTPM: 82.7
2140 Male, age 76, both hemispheres 84.9
2053 Male, age 18, unknown 83.5
2272 Male, age 74, both hemispheres 79.9
Pretectal area
nTPM: 82.4
1816 Male, age 51, unknown 90.2
1817 Female, age 42, unknown 88.7
1944 Female, age 72, unknown 86.7
1815 Male, age 53, unknown 83.8
2007 Male, age 72, unknown 83.6
2224 Female, age 72, unknown 82.2
2667 Female, age 75, unknown 81.5
2825 Male, age 18, unknown 81.1
2316 Male, age 76, right hemisphere 79.0
2273 Male, age 74, both hemispheres 76.2
2407 Male, age 75, both hemispheres 73.9
Red nucleus
nTPM: 77.4
1821 Female, age 72, unknown 81.7
2503 Female, age 72, unknown 81.7
2725 Female, age 75, unknown 81.1
1954 Female, age 42, unknown 79.2
2823 Male, age 76, right hemisphere 79.2
2769 Male, age 72, unknown 76.0
1904 Male, age 53, unknown 75.2
2588 Male, age 74, left hemisphere 75.2
1865 Male, age 51, unknown 75.1
2785 Male, age 18, unknown 75.1
2227 Male, age 72, unknown 74.8
2584 Male, age 75, left hemisphere 74.2
Substantia nigra
nTPM: 82.1
2699 Male, age 18, unknown 87.2
1916 Female, age 42, unknown 85.8
1851 Male, age 51, unknown 84.6
2665 Male, age 74, both hemispheres 84.3
1889 Female, age 72, unknown 84.2
2241 Male, age 72, unknown 81.7
1941 Male, age 53, unknown 81.2
2590 Female, age 75, unknown 80.6
2583 Male, age 75, right hemisphere 77.3
2409 Female, age 72, unknown 73.9
Superior colliculus
nTPM: 79.9
1796 Male, age 53, unknown 85.1
2087 Female, age 72, unknown 81.8
1995 Male, age 72, unknown 80.7
1913 Female, age 42, unknown 80.6
2261 Male, age 18, unknown 79.5
2668 Female, age 75, unknown 79.0
1839 Male, age 51, unknown 78.9
2587 Male, age 74, left hemisphere 78.9
1895 Male, age 76, right hemisphere 78.5
2664 Male, age 75, both hemispheres 76.4
Ventral tegmental area
nTPM: 82.7
1915 Female, age 42, unknown 84.9
2218 Male, age 76, both hemispheres 84.6
2410 Female, age 72, unknown 84.1
2021 Male, age 53, unknown 81.3
2223 Female, age 72, unknown 80.9
1942 Male, age 51, unknown 80.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.1
Samples: 139

Max nTPM: 133.8
Min nTPM: 29.5
Std nTPM: 18.8
Median nTPM: 61.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 133.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 129.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 123.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 117.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 108.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 98.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 98.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 97.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 96.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 96.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 92.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.0
FF:10158-103A5 76 years, female 94.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.1
Pig sample Sample description nTPM
Midbrain
nTPM: 15.6
Samples: 4

Max nTPM: 17.3
Min nTPM: 14.5
Sample A Female 17.3
Sample B Female 14.5
Sample C Male 15.9
Sample D Male 14.6
Periaqueductal gray
nTPM: 13.5
Samples: 3

Max nTPM: 15.5
Min nTPM: 11.5
Sample B Female 11.5
Sample C Male 15.5
Sample D Male 13.5
Substantia nigra
nTPM: 21.2
Samples: 4

Max nTPM: 28.4
Min nTPM: 14.1
Sample A Female 28.4
Sample B Female 18.9
Sample C Male 23.2
Sample D Male 14.1
Superior colliculi
nTPM: 15.2
Samples: 4

Max nTPM: 17.5
Min nTPM: 12.1
Sample A Female 17.5
Sample B Female 13.8
Sample C Male 12.1
Sample D Male 17.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.1
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.1
Sample A Male 6.1
Sample B Male 5.3
Sample C Female 4.1
Sample D Female 5.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68269295 Antisense, RP_041129_01_F03, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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