BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.9 nTPM
HPA:16.9 nTPM
GTEx:14.2 nTPM
FANTOM5:35.5 Scaled Tags Per Million
Pig:13.8 nTPM
Mouse:42.4 nTPM
Allen mouse:1.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 14.8
2289 Male, age 61, right hemisphere 16.2
2288 Male, age 75, left hemisphere 15.8
1781 Male, age 74, unknown 15.3
1854 Male, age 80, left hemisphere 15.1
2290 Female, age 72, unknown 14.5
2846 Female, age 79, unknown 14.4
1857 Female, age 85, left hemisphere 14.0
2481 Female, age 94, left hemisphere 13.0
Claustrum
nTPM: 15.9
2645 Female, age 72, unknown 17.5
2568 Male, age 61, both hemispheres 17.2
2491 Male, age 75, both hemispheres 17.0
2284 Female, age 91, both hemispheres 16.6
2392 Female, age 94, both hemispheres 15.9
2198 Male, age 80, both hemispheres 15.8
2196 Female, age 79, unknown 14.6
2292 Female, age 85, both hemispheres 14.2
1956 Male, age 74, unknown 14.0
Globus pallidus, externus
nTPM: 15.4
2772 Female, age 79, unknown 17.7
2395 Male, age 75, both hemispheres 15.4
2567 Female, age 72, unknown 14.7
2646 Male, age 61, right hemisphere 14.6
1996 Male, age 80, right hemisphere 14.5
Globus pallidus, internus
nTPM: 13.9
2778 Female, age 91, both hemispheres 15.5
2287 Male, age 75, right hemisphere 14.4
1818 Male, age 74, unknown 14.0
2111 Female, age 85, right hemisphere 14.0
2037 Male, age 80, right hemisphere 13.3
2483 Female, age 94, right hemisphere 13.2
2566 Female, age 72, unknown 12.9
Nucleus accumbens
nTPM: 15.0
2824 Male, age 61, right hemisphere 16.2
2732 Male, age 80, right hemisphere 15.8
1783 Male, age 74, unknown 15.6
1856 Female, age 91, right hemisphere 15.4
2286 Male, age 75, left hemisphere 15.4
1806 Female, age 85, left hemisphere 14.8
2391 Female, age 94, left hemisphere 14.0
2698 Female, age 72, unknown 12.6
Nucleus basalis of Meynert
nTPM: 14.8
2821 Male, age 75, both hemispheres 15.2
2484 Female, age 94, left hemisphere 15.1
2393 Male, age 80, right hemisphere 14.6
2569 Male, age 61, both hemispheres 14.3
Nucleus of the diagonal band
nTPM: 16.0
2775 Male, age 80, right hemisphere 17.3
2029 Male, age 61, right hemisphere 16.6
1812 Female, age 91, both hemispheres 15.6
1979 Male, age 74, unknown 15.5
2195 Female, age 85, both hemispheres 15.2
Olfactory tubercle
nTPM: 16.9
1998 Female, age 91, both hemispheres 18.2
2487 Female, age 94, left hemisphere 18.2
2856 Male, age 75, right hemisphere 16.3
1846 Male, age 80, right hemisphere 14.8
Putamen
nTPM: 14.6
2466 Female, age 79, unknown 16.1
1937 Female, age 91, right hemisphere 15.3
2647 Male, age 75, left hemisphere 14.8
1838 Male, age 80, right hemisphere 14.7
1829 Male, age 74, unknown 14.1
2489 Female, age 72, unknown 13.6
2482 Female, age 94, left hemisphere 13.4
Septal nuclei
nTPM: 15.5
1960 Male, age 74, unknown 17.5
2009 Female, age 91, both hemispheres 15.9
2059 Female, age 85, both hemispheres 15.9
2031 Female, age 72, unknown 15.5
2394 Male, age 61, left hemisphere 15.3
2199 Male, age 80, right hemisphere 14.3
2629 Female, age 94, right hemisphere 14.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.3
Samples: 246

Max nTPM: 22.8
Min nTPM: 6.2
Std nTPM: 2.8
Median nTPM: 13.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 22.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 22.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 20.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 20.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 20.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 20.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 20.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 19.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 18.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 18.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 18.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 14.2
Samples: 246

Max nTPM: 26.6
Min nTPM: 6.3
Std nTPM: 2.7
Median nTPM: 14.1
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 26.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 25.7
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 20.8
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 20.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 20.7
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 20.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 20.4
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 20.3
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 19.8
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 19.2
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 18.9
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Brain - Putamen (basal ganglia)
Average nTPM: 13.9
Samples: 205

Max nTPM: 23.7
Min nTPM: 8.7
Std nTPM: 2.6
Median nTPM: 13.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 23.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 21.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 21.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 21.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 20.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 19.8
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 19.8
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 19.5
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 19.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 19.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 18.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.9
FF:10164-103B2 76 years, female 28.9
Globus pallidus
Scaled Tags Per Million: 35.5
FF:10175-103C4 60 years, female 37.8
FF:10161-103A8 76 years, female 33.2
Nucleus accumbens
Scaled Tags Per Million: 29.4
FF:10037-101F1 23-56 years, mixed 29.4
Putamen
Scaled Tags Per Million: 30.1
FF:10176-103C5 60 years, female 30.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.8
Pig sample Sample description nTPM
Caudate
nTPM: 13.0
Samples: 4

Max nTPM: 15.5
Min nTPM: 10.2
Sample A Female 10.2
Sample B Female 13.4
Sample C Male 15.5
Sample D Male 12.8
Putamen
nTPM: 13.8
Samples: 4

Max nTPM: 17.6
Min nTPM: 10.6
Sample A Female 10.6
Sample B Female 12.1
Sample C Male 17.6
Sample D Male 14.7
Septum
nTPM: 11.3
Samples: 4

Max nTPM: 12.1
Min nTPM: 10.5
Sample A Female 10.5
Sample B Female 10.8
Sample C Male 12.1
Sample D Male 11.8
Ventral pallidum
nTPM: 12.1
Samples: 4

Max nTPM: 14.1
Min nTPM: 10.0
Sample A Female 10.0
Sample B Female 13.2
Sample C Male 14.1
Sample D Male 11.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 42.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 39.8
Samples: 4

Max nTPM: 42.1
Min nTPM: 37.9
Sample A Male 42.1
Sample B Male 41.2
Sample C Female 37.9
Sample D Female 38.1
Septum
nTPM: 42.0
Samples: 4

Max nTPM: 45.0
Min nTPM: 38.5
Sample A Male 45.0
Sample B Male 42.8
Sample C Female 41.8
Sample D Female 38.5
Ventral forebrain
nTPM: 42.4
Samples: 4

Max nTPM: 47.6
Min nTPM: 36.1
Sample A Male 47.6
Sample B Male 41.5
Sample C Female 44.4
Sample D Female 36.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.1
69783100 Antisense, RP_050505_04_D02, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 1.2
69783100 Antisense, RP_050505_04_D02, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

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