MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:63.5 nTPM
HPA:63.5 nTPM
GTEx:69.5 nTPM
FANTOM5:118.1 Scaled Tags Per Million
Pig:177.1 nTPM
Mouse:271.1 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.1
2586 Male, age 75, left hemisphere 73.8
2019 Male, age 18, unknown 56.2
1833 Male, age 53, unknown 52.4
2828 Female, age 72, unknown 50.2
2219 Male, age 76, both hemispheres 46.6
1830 Male, age 51, unknown 41.0
1827 Male, age 72, unknown 36.4
1870 Female, age 42, unknown 32.5
2411 Female, age 72, unknown 31.9
2666 Male, age 74, left hemisphere 30.2
Dorsal raphe nucleus
nTPM: 31.5
1828 Male, age 53, unknown 38.1
2047 Male, age 72, unknown 31.5
2016 Female, age 72, unknown 31.3
2750 Male, age 76, both hemispheres 29.7
2298 Female, age 72, unknown 26.9
Inferior colliculus
nTPM: 55.6
1848 Female, age 42, unknown 72.5
2849 Male, age 72, unknown 59.9
1890 Male, age 53, unknown 51.4
2097 Female, age 72, unknown 38.6
Median raphe nucleus
nTPM: 16.5
2220 Male, age 76, midline 16.5
Pedunculopontine tegmental nucleus
nTPM: 24.7
1921 Female, age 85, both hemispheres 47.6
2334 Male, age 80, both hemispheres 21.1
2338 Male, age 61, both hemispheres 5.4
Periaquaductal grey, anterior
nTPM: 37.2
2502 Female, age 75, unknown 53.4
1947 Male, age 18, unknown 32.6
1795 Male, age 51, unknown 25.6
Periaquaductal grey, dorsal
nTPM: 32.5
1840 Male, age 53, unknown 40.7
2464 Female, age 72, unknown 40.1
2850 Male, age 76, both hemispheres 29.1
1831 Male, age 72, unknown 20.0
Periaquaductal grey, lateral
nTPM: 32.6
2140 Male, age 76, both hemispheres 42.6
2053 Male, age 18, unknown 30.9
2272 Male, age 74, both hemispheres 24.2
Pretectal area
nTPM: 53.7
1817 Female, age 42, unknown 84.9
1816 Male, age 51, unknown 76.5
1815 Male, age 53, unknown 66.7
1944 Female, age 72, unknown 64.3
2316 Male, age 76, right hemisphere 58.7
2667 Female, age 75, unknown 58.1
2007 Male, age 72, unknown 57.8
2825 Male, age 18, unknown 36.2
2407 Male, age 75, both hemispheres 35.6
2224 Female, age 72, unknown 30.4
2273 Male, age 74, both hemispheres 22.2
Red nucleus
nTPM: 63.5
1904 Male, age 53, unknown 86.5
2227 Male, age 72, unknown 72.8
2503 Female, age 72, unknown 72.0
1954 Female, age 42, unknown 70.5
2588 Male, age 74, left hemisphere 69.5
2769 Male, age 72, unknown 67.9
1821 Female, age 72, unknown 67.1
2823 Male, age 76, right hemisphere 65.0
1865 Male, age 51, unknown 60.8
2785 Male, age 18, unknown 55.4
2725 Female, age 75, unknown 44.4
2584 Male, age 75, left hemisphere 30.4
Substantia nigra
nTPM: 39.5
1889 Female, age 72, unknown 71.1
1916 Female, age 42, unknown 48.5
2699 Male, age 18, unknown 47.4
2583 Male, age 75, right hemisphere 38.9
2241 Male, age 72, unknown 38.8
2409 Female, age 72, unknown 35.6
1851 Male, age 51, unknown 34.3
2665 Male, age 74, both hemispheres 33.0
2590 Female, age 75, unknown 32.5
1941 Male, age 53, unknown 14.9
Superior colliculus
nTPM: 52.2
1895 Male, age 76, right hemisphere 74.8
2087 Female, age 72, unknown 70.5
2261 Male, age 18, unknown 58.0
2664 Male, age 75, both hemispheres 52.6
1995 Male, age 72, unknown 52.4
2668 Female, age 75, unknown 50.5
1839 Male, age 51, unknown 47.9
1796 Male, age 53, unknown 43.3
1913 Female, age 42, unknown 37.7
2587 Male, age 74, left hemisphere 34.3
Ventral tegmental area
nTPM: 32.3
2410 Female, age 72, unknown 48.9
1942 Male, age 51, unknown 36.0
2218 Male, age 76, both hemispheres 33.7
2223 Female, age 72, unknown 27.2
1915 Female, age 42, unknown 26.4
2021 Male, age 53, unknown 21.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 69.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.5
Samples: 139

Max nTPM: 153.7
Min nTPM: 22.2
Std nTPM: 24.8
Median nTPM: 68.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 153.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 133.9
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 122.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 117.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 108.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 107.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 107.2
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 105.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 105.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 104.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 104.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 118.1
FF:10158-103A5 76 years, female 118.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 177.1
Pig sample Sample description nTPM
Midbrain
nTPM: 171.2
Samples: 4

Max nTPM: 270.3
Min nTPM: 109.5
Sample A Female 109.5
Sample B Female 121.1
Sample C Male 270.3
Sample D Male 184.0
Periaqueductal gray
nTPM: 104.2
Samples: 3

Max nTPM: 123.0
Min nTPM: 92.4
Sample B Female 123.0
Sample C Male 97.1
Sample D Male 92.4
Substantia nigra
nTPM: 116.6
Samples: 4

Max nTPM: 154.0
Min nTPM: 84.9
Sample A Female 113.7
Sample B Female 84.9
Sample C Male 113.8
Sample D Male 154.0
Superior colliculi
nTPM: 177.1
Samples: 4

Max nTPM: 244.0
Min nTPM: 97.2
Sample A Female 169.1
Sample B Female 97.2
Sample C Male 198.0
Sample D Male 244.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 271.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 271.1
Samples: 4

Max nTPM: 276.3
Min nTPM: 262.5
Sample A Male 271.7
Sample B Male 262.5
Sample C Female 274.0
Sample D Female 276.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
79591685 Antisense, RP_071204_04_H01, Mouse strain C57BL/6J (56 days, male) 9.1
79904152 Antisense, RP_071204_04_H01, Mouse strain C57BL/6J (56 days, male) 6.4
477 Antisense, RP_Baylor_253976, Mouse strain C57BL/6J (56 days, male) 2.9
476 Antisense, RP_Baylor_253976, Mouse strain C57BL/6J (56 days, male) 0.8
478 Sense, RPS_Baylor_37137, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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