BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:12.8 nTPM
HPA:12.8 nTPM
GTEx:12.7 nTPM
FANTOM5:93.9 Scaled Tags Per Million
Pig:13.6 nTPM
Mouse:122.4 nTPM
Allen mouse:1.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 8.5
2288 Male, age 75, left hemisphere 9.8
2481 Female, age 94, left hemisphere 9.8
2289 Male, age 61, right hemisphere 8.5
2290 Female, age 72, unknown 8.3
1781 Male, age 74, unknown 8.2
1854 Male, age 80, left hemisphere 8.0
2846 Female, age 79, unknown 7.8
1857 Female, age 85, left hemisphere 7.5
Claustrum
nTPM: 10.0
2292 Female, age 85, both hemispheres 12.5
2392 Female, age 94, both hemispheres 10.4
1956 Male, age 74, unknown 10.2
2284 Female, age 91, both hemispheres 10.0
2198 Male, age 80, both hemispheres 9.6
2196 Female, age 79, unknown 9.5
2645 Female, age 72, unknown 9.5
2491 Male, age 75, both hemispheres 9.2
2568 Male, age 61, both hemispheres 8.8
Globus pallidus, externus
nTPM: 11.7
2567 Female, age 72, unknown 13.1
2646 Male, age 61, right hemisphere 11.9
1996 Male, age 80, right hemisphere 11.2
2395 Male, age 75, both hemispheres 11.2
2772 Female, age 79, unknown 10.9
Globus pallidus, internus
nTPM: 12.8
2111 Female, age 85, right hemisphere 15.9
2778 Female, age 91, both hemispheres 14.1
2566 Female, age 72, unknown 13.3
2037 Male, age 80, right hemisphere 11.8
2287 Male, age 75, right hemisphere 11.8
1818 Male, age 74, unknown 11.4
2483 Female, age 94, right hemisphere 11.2
Nucleus accumbens
nTPM: 9.0
2732 Male, age 80, right hemisphere 11.1
2391 Female, age 94, left hemisphere 10.3
2286 Male, age 75, left hemisphere 9.6
2698 Female, age 72, unknown 9.0
2824 Male, age 61, right hemisphere 9.0
1783 Male, age 74, unknown 8.1
1806 Female, age 85, left hemisphere 8.1
1856 Female, age 91, right hemisphere 7.1
Nucleus basalis of Meynert
nTPM: 9.5
2569 Male, age 61, both hemispheres 10.9
2393 Male, age 80, right hemisphere 9.3
2484 Female, age 94, left hemisphere 9.2
2821 Male, age 75, both hemispheres 8.7
Nucleus of the diagonal band
nTPM: 8.7
1979 Male, age 74, unknown 9.8
2029 Male, age 61, right hemisphere 9.0
2195 Female, age 85, both hemispheres 8.6
2775 Male, age 80, right hemisphere 8.5
1812 Female, age 91, both hemispheres 7.6
Olfactory tubercle
nTPM: 8.6
2856 Male, age 75, right hemisphere 9.2
1998 Female, age 91, both hemispheres 9.0
1846 Male, age 80, right hemisphere 8.3
2487 Female, age 94, left hemisphere 8.2
Putamen
nTPM: 8.9
2489 Female, age 72, unknown 9.8
2647 Male, age 75, left hemisphere 9.7
2482 Female, age 94, left hemisphere 9.6
1829 Male, age 74, unknown 8.8
2466 Female, age 79, unknown 8.8
1937 Female, age 91, right hemisphere 8.1
1838 Male, age 80, right hemisphere 7.3
Septal nuclei
nTPM: 8.8
2394 Male, age 61, left hemisphere 10.5
2199 Male, age 80, right hemisphere 10.3
2009 Female, age 91, both hemispheres 8.7
2059 Female, age 85, both hemispheres 8.4
2031 Female, age 72, unknown 8.2
1960 Male, age 74, unknown 7.9
2629 Female, age 94, right hemisphere 7.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.7
Samples: 246

Max nTPM: 22.8
Min nTPM: 6.3
Std nTPM: 2.6
Median nTPM: 12.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 22.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 20.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 20.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 20.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 19.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 19.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 18.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 18.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 17.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 17.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 17.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.6
Samples: 246

Max nTPM: 21.8
Min nTPM: 7.0
Std nTPM: 2.6
Median nTPM: 11.0
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 21.8
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 20.2
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 19.9
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 18.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 18.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 17.8
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 17.5
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 17.1
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 17.1
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 17.1
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 16.9
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Brain - Putamen (basal ganglia)
Average nTPM: 12.6
Samples: 205

Max nTPM: 21.4
Min nTPM: 6.6
Std nTPM: 2.4
Median nTPM: 12.2
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 21.4
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 20.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 20.4
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 19.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 18.7
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 17.8
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 17.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 17.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 16.9
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 16.8
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 16.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 43.1
FF:10164-103B2 76 years, female 43.1
Globus pallidus
Scaled Tags Per Million: 93.9
FF:10161-103A8 76 years, female 116.9
FF:10175-103C4 60 years, female 71.0
Nucleus accumbens
Scaled Tags Per Million: 62.4
FF:10037-101F1 23-56 years, mixed 62.4
Putamen
Scaled Tags Per Million: 49.5
FF:10176-103C5 60 years, female 49.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.6
Pig sample Sample description nTPM
Caudate
nTPM: 11.9
Samples: 4

Max nTPM: 13.2
Min nTPM: 10.2
Sample A Female 12.0
Sample B Female 12.3
Sample C Male 13.2
Sample D Male 10.2
Putamen
nTPM: 13.5
Samples: 4

Max nTPM: 16.4
Min nTPM: 11.0
Sample A Female 13.1
Sample B Female 11.0
Sample C Male 16.4
Sample D Male 13.3
Septum
nTPM: 13.6
Samples: 4

Max nTPM: 14.7
Min nTPM: 12.4
Sample A Female 14.2
Sample B Female 12.4
Sample C Male 14.7
Sample D Male 12.9
Ventral pallidum
nTPM: 13.4
Samples: 4

Max nTPM: 14.1
Min nTPM: 12.2
Sample A Female 12.2
Sample B Female 14.1
Sample C Male 13.6
Sample D Male 13.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 122.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 122.4
Samples: 4

Max nTPM: 131.3
Min nTPM: 114.9
Sample A Male 120.9
Sample B Male 114.9
Sample C Female 122.5
Sample D Female 131.3
Septum
nTPM: 93.8
Samples: 4

Max nTPM: 99.5
Min nTPM: 89.3
Sample A Male 96.9
Sample B Male 99.5
Sample C Female 89.3
Sample D Female 89.4
Ventral forebrain
nTPM: 100.6
Samples: 4

Max nTPM: 103.4
Min nTPM: 98.6
Sample A Male 100.2
Sample B Male 103.4
Sample C Female 100.0
Sample D Female 98.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.1
70546311 Antisense, RP_050623_04_A05, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 0.9
70546311 Antisense, RP_050623_04_A05, Mouse strain C57BL/6J (56 days, male) 0.9

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