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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:104.2 nTPM
HPA:104.2 nTPM
GTEx:215.8 nTPM
FANTOM5:334.4 Scaled Tags Per Million
Pig:67.5 nTPM
Mouse:201.5 nTPM
Allen mouse:18.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 104.2
Sample id Sample description nTPM
Amygdala
nTPM: 26.3
2517 Female, age 94, left hemisphere 54.7
1987 Female, age 91, left hemisphere 37.0
2814 Male, age 76, right hemisphere 34.4
2514 Male, age 75, right hemisphere 5.5
2695 Female, age 67, right hemisphere 0.0
Basal amygdala
nTPM: 104.2
2243 Female, age 91, right hemisphere 159.6
2685 Female, age 94, left hemisphere 140.1
2827 Female, age 67, right hemisphere 100.8
2110 Male, age 80, left hemisphere 93.3
2609 Male, age 75, right hemisphere 79.7
1955 Male, age 76, both hemispheres 51.7
Central amygdala
nTPM: 62.1
2826 Female, age 94, left hemisphere 130.6
2239 Male, age 80, left hemisphere 80.5
2701 Female, age 91, right hemisphere 42.8
2515 Male, age 75, right hemisphere 37.1
1905 Male, age 76, both hemispheres 19.3
Corticomedial amygdala
nTPM: 91.5
2535 Female, age 67, right hemisphere 164.2
2829 Male, age 80, left hemisphere 116.9
2242 Female, age 91, right hemisphere 104.6
2429 Female, age 94, left hemisphere 77.3
2428 Male, age 75, right hemisphere 46.4
2240 Male, age 76, both hemispheres 39.8
Lateral amygdala
nTPM: 62.9
2534 Female, age 94, left hemisphere 157.3
2256 Male, age 80, left hemisphere 90.7
2255 Female, age 91, right hemisphere 69.6
1883 Male, age 76, both hemispheres 32.7
2516 Male, age 75, right hemisphere 16.1
2830 Female, age 67, right hemisphere 11.0
Stria terminalis, bed nucleus
nTPM: 95.8
1974 Female, age 91, both hemispheres 146.6
2486 Female, age 94, both hemispheres 120.2
2201 Male, age 74, unknown 20.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 215.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 215.8
Samples: 152

Max nTPM: 699.0
Min nTPM: 14.9
Std nTPM: 109.7
Median nTPM: 201.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 699.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 549.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 498.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 465.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 419.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 406.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 404.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 401.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 384.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 384.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 379.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 362.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 362.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 351.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 350.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 349.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 347.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 344.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 339.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 339.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 335.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 335.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 333.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 329.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 325.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 323.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 318.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 318.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 316.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 316.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 316.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 313.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 311.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 307.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 303.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 296.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 294.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 294.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 294.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 293.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 287.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 285.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 274.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 274.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 271.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 270.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 265.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 264.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 263.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 260.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 255.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 255.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 252.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 252.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 249.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 248.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 244.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 243.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 240.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 240.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 237.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 234.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 231.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 227.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 225.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 224.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 220.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 216.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 216.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 216.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 215.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 211.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 209.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 207.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 206.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 204.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 197.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 184.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 184.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 184.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 180.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 177.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 176.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 175.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 170.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 169.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 168.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 168.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 167.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 166.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 166.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 165.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 158.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 158.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 157.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 155.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 155.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 149.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 147.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 146.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 144.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 144.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 142.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 142.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 140.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 140.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 140.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 139.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 138.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 136.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 134.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 133.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 133.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 132.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 131.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 128.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 126.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 126.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 125.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 125.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 125.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 123.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 121.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 120.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 118.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 116.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 116.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 116.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 114.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 114.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 113.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 108.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 106.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 104.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 102.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 102.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 101.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 97.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 95.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 90.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 87.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 86.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 82.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 82.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 72.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 71.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 62.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 59.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 43.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 40.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 27.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 14.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 334.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 334.4
FF:10151-102I7 76 years, female 334.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 67.5
Pig sample Sample description nTPM
Amygdala
nTPM: 67.5
Samples: 4

Max nTPM: 108.2
Min nTPM: 42.8
Sample A Female 108.2
Sample B Female 42.8
Sample C Male 54.1
Sample D Male 64.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 201.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 201.6
Samples: 4

Max nTPM: 221.5
Min nTPM: 190.0
Sample A Male 190.0
Sample B Male 196.7
Sample C Female 221.5
Sample D Female 198.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 18.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.4
79544804 Antisense, RP_071018_01_E09, Mouse strain C57BL/6J (56 days, male) 18.4

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