BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:36.6 nTPM
HPA:36.6 nTPM
GTEx:28.3 nTPM
FANTOM5:71.0 Scaled Tags Per Million
Pig:11.6 nTPM
Mouse:88.3 nTPM
Allen mouse:0.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA021234Antibody HPA029885
Glial cells MediumNot detected
Neuronal cells MediumMedium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.9
2481 Female, age 94, left hemisphere 36.1
1781 Male, age 74, unknown 35.3
1857 Female, age 85, left hemisphere 35.1
1854 Male, age 80, left hemisphere 34.8
2288 Male, age 75, left hemisphere 34.8
2289 Male, age 61, right hemisphere 34.5
2290 Female, age 72, unknown 34.2
2846 Female, age 79, unknown 34.1
Claustrum
nTPM: 33.9
1956 Male, age 74, unknown 34.6
2568 Male, age 61, both hemispheres 34.6
2392 Female, age 94, both hemispheres 34.1
2198 Male, age 80, both hemispheres 34.0
2196 Female, age 79, unknown 33.9
2491 Male, age 75, both hemispheres 33.9
2284 Female, age 91, both hemispheres 33.6
2645 Female, age 72, unknown 33.2
2292 Female, age 85, both hemispheres 33.1
Globus pallidus, externus
nTPM: 36.4
1996 Male, age 80, right hemisphere 37.9
2772 Female, age 79, unknown 37.7
2395 Male, age 75, both hemispheres 36.2
2646 Male, age 61, right hemisphere 35.6
2567 Female, age 72, unknown 34.8
Globus pallidus, internus
nTPM: 36.6
2483 Female, age 94, right hemisphere 37.5
2037 Male, age 80, right hemisphere 37.1
1818 Male, age 74, unknown 36.9
2287 Male, age 75, right hemisphere 36.8
2778 Female, age 91, both hemispheres 36.5
2566 Female, age 72, unknown 36.3
2111 Female, age 85, right hemisphere 35.0
Nucleus accumbens
nTPM: 34.7
2286 Male, age 75, left hemisphere 35.7
1783 Male, age 74, unknown 35.6
1806 Female, age 85, left hemisphere 35.4
2824 Male, age 61, right hemisphere 35.0
1856 Female, age 91, right hemisphere 34.5
2732 Male, age 80, right hemisphere 34.1
2698 Female, age 72, unknown 33.9
2391 Female, age 94, left hemisphere 33.4
Nucleus basalis of Meynert
nTPM: 35.1
2569 Male, age 61, both hemispheres 36.6
2821 Male, age 75, both hemispheres 35.0
2484 Female, age 94, left hemisphere 34.5
2393 Male, age 80, right hemisphere 34.2
Nucleus of the diagonal band
nTPM: 34.5
2775 Male, age 80, right hemisphere 35.1
1812 Female, age 91, both hemispheres 34.9
2029 Male, age 61, right hemisphere 34.6
1979 Male, age 74, unknown 34.3
2195 Female, age 85, both hemispheres 33.9
Olfactory tubercle
nTPM: 34.2
1846 Male, age 80, right hemisphere 35.2
1998 Female, age 91, both hemispheres 34.2
2856 Male, age 75, right hemisphere 34.2
2487 Female, age 94, left hemisphere 33.2
Putamen
nTPM: 35.1
1838 Male, age 80, right hemisphere 35.7
2466 Female, age 79, unknown 35.7
2647 Male, age 75, left hemisphere 35.6
1937 Female, age 91, right hemisphere 35.3
1829 Male, age 74, unknown 35.0
2482 Female, age 94, left hemisphere 35.0
2489 Female, age 72, unknown 33.2
Septal nuclei
nTPM: 34.2
2031 Female, age 72, unknown 36.1
1960 Male, age 74, unknown 34.5
2009 Female, age 91, both hemispheres 34.5
2394 Male, age 61, left hemisphere 34.5
2199 Male, age 80, right hemisphere 33.7
2059 Female, age 85, both hemispheres 33.4
2629 Female, age 94, right hemisphere 32.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.3
Samples: 246

Max nTPM: 41.3
Min nTPM: 13.9
Std nTPM: 5.0
Median nTPM: 26.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 41.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 41.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 38.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 37.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 36.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 36.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 35.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 35.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 35.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 35.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 34.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.7
Samples: 246

Max nTPM: 47.3
Min nTPM: 12.7
Std nTPM: 6.7
Median nTPM: 27.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 47.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 45.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 43.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 43.6
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 43.3
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 42.9
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 41.4
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 41.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 40.9
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 40.8
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 40.7
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Brain - Putamen (basal ganglia)
Average nTPM: 28.3
Samples: 205

Max nTPM: 39.2
Min nTPM: 17.8
Std nTPM: 4.1
Median nTPM: 27.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 39.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 38.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 37.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 37.3
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 36.6
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 36.5
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 36.5
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 36.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 36.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 36.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 36.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 56.3
FF:10164-103B2 76 years, female 56.3
Globus pallidus
Scaled Tags Per Million: 56.1
FF:10175-103C4 60 years, female 71.8
FF:10161-103A8 76 years, female 40.4
Nucleus accumbens
Scaled Tags Per Million: 37.0
FF:10037-101F1 23-56 years, mixed 37.0
Putamen
Scaled Tags Per Million: 71.0
FF:10176-103C5 60 years, female 71.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.6
Pig sample Sample description nTPM
Caudate
nTPM: 10.8
Samples: 4

Max nTPM: 13.9
Min nTPM: 6.0
Sample A Female 11.1
Sample B Female 12.3
Sample C Male 13.9
Sample D Male 6.0
Putamen
nTPM: 11.6
Samples: 4

Max nTPM: 14.8
Min nTPM: 8.7
Sample A Female 13.6
Sample B Female 8.7
Sample C Male 14.8
Sample D Male 9.3
Septum
nTPM: 10.0
Samples: 4

Max nTPM: 14.9
Min nTPM: 6.8
Sample A Female 14.9
Sample B Female 9.7
Sample C Male 8.7
Sample D Male 6.8
Ventral pallidum
nTPM: 10.4
Samples: 4

Max nTPM: 12.5
Min nTPM: 8.0
Sample A Female 12.0
Sample B Female 12.5
Sample C Male 9.0
Sample D Male 8.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 88.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 71.4
Samples: 4

Max nTPM: 72.5
Min nTPM: 70.1
Sample A Male 71.3
Sample B Male 70.1
Sample C Female 71.7
Sample D Female 72.5
Septum
nTPM: 88.3
Samples: 4

Max nTPM: 97.7
Min nTPM: 83.2
Sample A Male 84.6
Sample B Male 97.7
Sample C Female 87.8
Sample D Female 83.2
Ventral forebrain
nTPM: 73.6
Samples: 4

Max nTPM: 78.1
Min nTPM: 70.0
Sample A Male 73.6
Sample B Male 70.0
Sample C Female 78.1
Sample D Female 72.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
71654122 Antisense, RP_050927_03_D05, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.4
71654122 Antisense, RP_050927_03_D05, Mouse strain C57BL/6J (56 days, male) 0.4

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