We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CSRP1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • CSRP1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:713.6 nTPM
HPA:713.6 nTPM
GTEx:456.8 nTPM
FANTOM5:646.1 Scaled Tags Per Million
Pig:105.9 nTPM
Mouse:242.6 nTPM
Allen mouse:2.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 713.6
Sample id Sample description nTPM
Amygdala
nTPM: 713.6
2695 Female, age 67, right hemisphere 898.6
2814 Male, age 76, right hemisphere 788.4
2514 Male, age 75, right hemisphere 646.1
2517 Female, age 94, left hemisphere 621.0
1987 Female, age 91, left hemisphere 614.1
Basal amygdala
nTPM: 633.9
2609 Male, age 75, right hemisphere 718.4
1955 Male, age 76, both hemispheres 660.5
2110 Male, age 80, left hemisphere 642.5
2685 Female, age 94, left hemisphere 607.5
2827 Female, age 67, right hemisphere 600.7
2243 Female, age 91, right hemisphere 573.7
Central amygdala
nTPM: 656.3
1905 Male, age 76, both hemispheres 751.2
2515 Male, age 75, right hemisphere 669.7
2826 Female, age 94, left hemisphere 642.5
2701 Female, age 91, right hemisphere 610.9
2239 Male, age 80, left hemisphere 607.1
Corticomedial amygdala
nTPM: 597.0
2428 Male, age 75, right hemisphere 660.6
2829 Male, age 80, left hemisphere 617.3
2240 Male, age 76, both hemispheres 614.8
2429 Female, age 94, left hemisphere 573.5
2242 Female, age 91, right hemisphere 558.1
2535 Female, age 67, right hemisphere 557.3
Lateral amygdala
nTPM: 644.4
1883 Male, age 76, both hemispheres 699.4
2516 Male, age 75, right hemisphere 691.6
2256 Male, age 80, left hemisphere 650.6
2830 Female, age 67, right hemisphere 636.9
2255 Female, age 91, right hemisphere 606.4
2534 Female, age 94, left hemisphere 581.7
Stria terminalis, bed nucleus
nTPM: 554.6
2201 Male, age 74, unknown 570.3
1974 Female, age 91, both hemispheres 552.6
2486 Female, age 94, both hemispheres 540.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 456.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 456.8
Samples: 152

Max nTPM: 973.4
Min nTPM: 56.9
Std nTPM: 139.1
Median nTPM: 441.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 973.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 886.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 781.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 768.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 743.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 733.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 719.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 702.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 660.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 656.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 655.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 651.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 648.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 644.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 642.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 639.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 636.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 632.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 630.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 628.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 627.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 609.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 609.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 606.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 602.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 596.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 594.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 581.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 581.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 570.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 565.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 553.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 551.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 546.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 546.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 545.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 539.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 534.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 531.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 531.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 530.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 529.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 528.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 520.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 517.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 514.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 511.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 510.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 508.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 506.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 504.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 501.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 495.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 487.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 486.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 479.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 476.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 475.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 473.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 473.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 471.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 471.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 470.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 469.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 465.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 464.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 462.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 461.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 460.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 458.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 456.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 449.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 449.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 448.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 445.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 442.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 439.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 435.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 434.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 433.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 432.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 429.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 426.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 423.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 422.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 422.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 415.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 415.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 413.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 408.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 406.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 403.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 403.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 396.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 395.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 394.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 393.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 389.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 387.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 386.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 384.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 383.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 382.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 382.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 382.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 378.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 378.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 372.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 372.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 372.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 371.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 371.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 364.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 362.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 362.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 361.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 360.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 357.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 357.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 357.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 356.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 356.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 351.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 350.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 344.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 344.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 342.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 338.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 337.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 336.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 331.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 325.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 324.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 323.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 321.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 312.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 303.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 302.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 290.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 288.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 281.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 277.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 271.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 268.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 263.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 262.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 243.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 241.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 236.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 199.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 81.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 56.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 646.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 646.1
FF:10151-102I7 76 years, female 646.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 105.9
Pig sample Sample description nTPM
Amygdala
nTPM: 105.9
Samples: 4

Max nTPM: 146.9
Min nTPM: 54.7
Sample A Female 105.9
Sample B Female 146.9
Sample C Male 115.9
Sample D Male 54.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 242.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 242.7
Samples: 4

Max nTPM: 316.0
Min nTPM: 204.4
Sample A Male 204.4
Sample B Male 217.9
Sample C Female 316.0
Sample D Female 232.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.5
68269598 Antisense, RP_041129_01_H05, Mouse strain C57BL/6J (56 days, male) 2.8
2130 Antisense, RP_Baylor_102712, Mouse strain C57BL/6J (56 days, male) 2.2
2129 Antisense, RP_Baylor_102712, Mouse strain C57BL/6J (56 days, male) 1.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.