MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:105.4 nTPM
HPA:105.4 nTPM
GTEx:87.7 nTPM
FANTOM5:439.2 Scaled Tags Per Million
Pig:128.0 nTPM
Mouse:29.5 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 105.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.6
2666 Male, age 74, left hemisphere 69.8
2828 Female, age 72, unknown 61.0
1830 Male, age 51, unknown 59.1
2019 Male, age 18, unknown 55.6
1833 Male, age 53, unknown 52.8
2411 Female, age 72, unknown 52.1
1870 Female, age 42, unknown 49.8
1827 Male, age 72, unknown 48.1
2219 Male, age 76, both hemispheres 40.6
2586 Male, age 75, left hemisphere 37.2
Dorsal raphe nucleus
nTPM: 64.5
2298 Female, age 72, unknown 77.8
2016 Female, age 72, unknown 71.1
2750 Male, age 76, both hemispheres 63.5
1828 Male, age 53, unknown 58.8
2047 Male, age 72, unknown 51.2
Inferior colliculus
nTPM: 53.4
2097 Female, age 72, unknown 60.5
1890 Male, age 53, unknown 53.2
1848 Female, age 42, unknown 50.7
2849 Male, age 72, unknown 49.2
Median raphe nucleus
nTPM: 55.5
2220 Male, age 76, midline 55.5
Pedunculopontine tegmental nucleus
nTPM: 105.4
2338 Male, age 61, both hemispheres 211.8
2334 Male, age 80, both hemispheres 64.8
1921 Female, age 85, both hemispheres 39.6
Periaquaductal grey, anterior
nTPM: 47.9
1795 Male, age 51, unknown 59.2
1947 Male, age 18, unknown 45.4
2502 Female, age 75, unknown 39.1
Periaquaductal grey, dorsal
nTPM: 64.2
1831 Male, age 72, unknown 77.9
2850 Male, age 76, both hemispheres 65.7
2464 Female, age 72, unknown 59.0
1840 Male, age 53, unknown 54.3
Periaquaductal grey, lateral
nTPM: 65.7
2272 Male, age 74, both hemispheres 78.2
2053 Male, age 18, unknown 60.5
2140 Male, age 76, both hemispheres 58.5
Pretectal area
nTPM: 57.5
2316 Male, age 76, right hemisphere 67.9
2407 Male, age 75, both hemispheres 67.7
2224 Female, age 72, unknown 64.9
2273 Male, age 74, both hemispheres 63.0
1817 Female, age 42, unknown 61.2
1944 Female, age 72, unknown 58.1
1815 Male, age 53, unknown 57.6
2007 Male, age 72, unknown 56.9
2825 Male, age 18, unknown 51.4
2667 Female, age 75, unknown 45.5
1816 Male, age 51, unknown 38.2
Red nucleus
nTPM: 56.0
2725 Female, age 75, unknown 69.0
2503 Female, age 72, unknown 66.9
1865 Male, age 51, unknown 65.6
2769 Male, age 72, unknown 61.5
2823 Male, age 76, right hemisphere 58.1
2227 Male, age 72, unknown 56.3
2785 Male, age 18, unknown 55.8
1904 Male, age 53, unknown 55.1
1821 Female, age 72, unknown 50.5
2584 Male, age 75, left hemisphere 48.9
1954 Female, age 42, unknown 46.6
2588 Male, age 74, left hemisphere 37.9
Substantia nigra
nTPM: 75.4
2590 Female, age 75, unknown 133.2
2699 Male, age 18, unknown 97.9
2665 Male, age 74, both hemispheres 87.3
1916 Female, age 42, unknown 73.2
1851 Male, age 51, unknown 69.3
2409 Female, age 72, unknown 63.5
1941 Male, age 53, unknown 62.9
2583 Male, age 75, right hemisphere 61.1
2241 Male, age 72, unknown 56.7
1889 Female, age 72, unknown 48.5
Superior colliculus
nTPM: 59.4
1913 Female, age 42, unknown 90.8
1995 Male, age 72, unknown 74.1
2587 Male, age 74, left hemisphere 71.0
1796 Male, age 53, unknown 59.3
2087 Female, age 72, unknown 56.9
1839 Male, age 51, unknown 56.3
2664 Male, age 75, both hemispheres 51.4
2261 Male, age 18, unknown 47.9
2668 Female, age 75, unknown 43.6
1895 Male, age 76, right hemisphere 43.2
Ventral tegmental area
nTPM: 70.6
2021 Male, age 53, unknown 92.1
2218 Male, age 76, both hemispheres 72.7
1915 Female, age 42, unknown 71.0
2410 Female, age 72, unknown 64.3
1942 Male, age 51, unknown 63.6
2223 Female, age 72, unknown 60.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 87.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.7
Samples: 139

Max nTPM: 528.8
Min nTPM: 3.9
Std nTPM: 93.3
Median nTPM: 56.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 528.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 488.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 483.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 326.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 322.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 313.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 307.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 300.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 272.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 224.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 214.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 439.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 439.2
FF:10158-103A5 76 years, female 439.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 128.0
Pig sample Sample description nTPM
Midbrain
nTPM: 66.8
Samples: 4

Max nTPM: 119.3
Min nTPM: 36.8
Sample A Female 66.2
Sample B Female 119.3
Sample C Male 36.8
Sample D Male 45.0
Periaqueductal gray
nTPM: 128.0
Samples: 3

Max nTPM: 175.4
Min nTPM: 97.8
Sample B Female 110.8
Sample C Male 175.4
Sample D Male 97.8
Substantia nigra
nTPM: 98.2
Samples: 4

Max nTPM: 120.2
Min nTPM: 61.0
Sample A Female 99.0
Sample B Female 120.2
Sample C Male 112.7
Sample D Male 61.0
Superior colliculi
nTPM: 59.9
Samples: 4

Max nTPM: 71.1
Min nTPM: 54.8
Sample A Female 71.1
Sample B Female 57.4
Sample C Male 54.8
Sample D Male 56.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.5
Samples: 4

Max nTPM: 35.4
Min nTPM: 25.5
Sample A Male 35.4
Sample B Male 25.5
Sample C Female 25.8
Sample D Female 31.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
70430916 Antisense, RP_050614_02_D02, Mouse strain C57BL/6J (56 days, male) 1.6
77340474 Antisense, RP_070116_02_C12, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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