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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:41.9 nTPM
HPA:41.9 nTPM
GTEx:70.7 nTPM
FANTOM5:93.0 Scaled Tags Per Million
Pig:60.2 nTPM
Mouse:108.9 nTPM
Allen mouse:11.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 41.9
Sample id Sample description nTPM
Amygdala
nTPM: 16.6
2517 Female, age 94, left hemisphere 27.3
1987 Female, age 91, left hemisphere 27.0
2514 Male, age 75, right hemisphere 14.7
2814 Male, age 76, right hemisphere 11.1
2695 Female, age 67, right hemisphere 2.8
Basal amygdala
nTPM: 41.9
2243 Female, age 91, right hemisphere 63.9
2685 Female, age 94, left hemisphere 54.5
2827 Female, age 67, right hemisphere 53.1
2609 Male, age 75, right hemisphere 33.1
2110 Male, age 80, left hemisphere 25.4
1955 Male, age 76, both hemispheres 21.6
Central amygdala
nTPM: 28.6
2239 Male, age 80, left hemisphere 40.6
2826 Female, age 94, left hemisphere 36.7
2701 Female, age 91, right hemisphere 32.8
2515 Male, age 75, right hemisphere 22.6
1905 Male, age 76, both hemispheres 10.2
Corticomedial amygdala
nTPM: 40.8
2242 Female, age 91, right hemisphere 64.1
2535 Female, age 67, right hemisphere 57.5
2829 Male, age 80, left hemisphere 43.1
2429 Female, age 94, left hemisphere 33.0
2240 Male, age 76, both hemispheres 24.7
2428 Male, age 75, right hemisphere 22.4
Lateral amygdala
nTPM: 27.0
2534 Female, age 94, left hemisphere 42.4
2255 Female, age 91, right hemisphere 38.7
2256 Male, age 80, left hemisphere 36.0
2830 Female, age 67, right hemisphere 21.3
1883 Male, age 76, both hemispheres 12.6
2516 Male, age 75, right hemisphere 10.9
Stria terminalis, bed nucleus
nTPM: 34.8
2486 Female, age 94, both hemispheres 41.6
2201 Male, age 74, unknown 32.9
1974 Female, age 91, both hemispheres 29.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 70.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 70.7
Samples: 152

Max nTPM: 166.1
Min nTPM: 1.8
Std nTPM: 30.0
Median nTPM: 67.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 166.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 146.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 138.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 137.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 127.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 124.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 123.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 121.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 119.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 117.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 115.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 114.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 112.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 111.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 110.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 108.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 105.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 104.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 104.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 104.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 103.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 102.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 102.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 102.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 101.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 101.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 98.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 96.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 96.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 96.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 95.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 94.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 94.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 94.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 92.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 92.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 91.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 91.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 91.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 90.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 90.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 90.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 87.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 85.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 85.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 85.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 84.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 83.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 83.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 83.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 82.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 82.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 82.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 82.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 81.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 81.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 80.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 80.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 80.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 78.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 78.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 78.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 78.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 77.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 77.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 77.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 76.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 76.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 75.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 74.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 74.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 73.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 72.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 69.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 68.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 67.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 67.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 67.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 66.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 65.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 65.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 65.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 64.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 64.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 63.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 63.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 63.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 62.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 62.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 61.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 61.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 60.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 60.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 60.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 59.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 58.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 58.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 58.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 58.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 58.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 57.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 57.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 57.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 56.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 55.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 55.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 55.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 53.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 52.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 52.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 52.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 51.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 51.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 50.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 50.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 49.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 49.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 48.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 48.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 47.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 47.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 47.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 44.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 43.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 43.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 43.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 42.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 40.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 39.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 36.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 35.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 35.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 34.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 34.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 33.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 32.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 32.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 31.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 31.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 30.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 28.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 28.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 27.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 24.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 23.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 23.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 17.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 16.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 13.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 10.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 2.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 93.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 93.0
FF:10151-102I7 76 years, female 93.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 60.2
Pig sample Sample description nTPM
Amygdala
nTPM: 60.3
Samples: 4

Max nTPM: 82.8
Min nTPM: 41.7
Sample A Female 82.8
Sample B Female 41.7
Sample C Male 58.4
Sample D Male 58.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 108.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 108.9
Samples: 4

Max nTPM: 122.8
Min nTPM: 92.5
Sample A Male 110.5
Sample B Male 122.8
Sample C Female 92.5
Sample D Female 109.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 11.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.6
74641324 Antisense, RP_060220_02_F01, Mouse strain C57BL/6J (56 days, male) 12.0
69837860 Antisense, RP_050222_02_D10, Mouse strain C57BL/6J (56 days, male) 11.3

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