We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
AMFR
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • AMFR
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:49.7 nTPM
HPA:49.7 nTPM
GTEx:38.8 nTPM
FANTOM5:38.9 Scaled Tags Per Million
Pig:37.3 nTPM
Mouse:81.8 nTPM
Allen mouse:15.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 49.7
Sample id Sample description nTPM
Amygdala
nTPM: 49.7
1987 Female, age 91, left hemisphere 52.3
2517 Female, age 94, left hemisphere 51.7
2514 Male, age 75, right hemisphere 49.4
2695 Female, age 67, right hemisphere 48.1
2814 Male, age 76, right hemisphere 47.1
Basal amygdala
nTPM: 45.1
2609 Male, age 75, right hemisphere 54.2
2110 Male, age 80, left hemisphere 48.1
2685 Female, age 94, left hemisphere 45.8
1955 Male, age 76, both hemispheres 44.4
2243 Female, age 91, right hemisphere 41.0
2827 Female, age 67, right hemisphere 37.1
Central amygdala
nTPM: 49.6
2515 Male, age 75, right hemisphere 56.8
2826 Female, age 94, left hemisphere 54.3
1905 Male, age 76, both hemispheres 47.9
2239 Male, age 80, left hemisphere 46.6
2701 Female, age 91, right hemisphere 42.7
Corticomedial amygdala
nTPM: 43.1
2428 Male, age 75, right hemisphere 50.4
2829 Male, age 80, left hemisphere 47.5
2240 Male, age 76, both hemispheres 43.8
2429 Female, age 94, left hemisphere 43.7
2242 Female, age 91, right hemisphere 41.6
2535 Female, age 67, right hemisphere 31.6
Lateral amygdala
nTPM: 48.0
2516 Male, age 75, right hemisphere 56.9
2534 Female, age 94, left hemisphere 49.2
1883 Male, age 76, both hemispheres 48.9
2256 Male, age 80, left hemisphere 46.1
2255 Female, age 91, right hemisphere 45.6
2830 Female, age 67, right hemisphere 41.6
Stria terminalis, bed nucleus
nTPM: 46.1
1974 Female, age 91, both hemispheres 49.1
2486 Female, age 94, both hemispheres 46.5
2201 Male, age 74, unknown 42.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 38.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 38.8
Samples: 152

Max nTPM: 58.7
Min nTPM: 25.4
Std nTPM: 6.1
Median nTPM: 38.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 58.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 55.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 53.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 51.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 51.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 50.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 49.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 49.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 48.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 47.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 47.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 46.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 46.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 46.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 46.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 46.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 46.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 46.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 45.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 45.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 45.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 44.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 44.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 44.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 44.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 44.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 44.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 44.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 44.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 44.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 44.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 43.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 43.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 43.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 43.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 43.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 43.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 43.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 42.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 42.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 42.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 42.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 42.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 42.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 42.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 42.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 42.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 41.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 41.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 41.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 41.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 41.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 41.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 41.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 41.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 41.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 41.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 40.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 40.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 40.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 40.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 40.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 40.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 39.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 39.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 39.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 39.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 39.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 39.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 39.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 39.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 39.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 38.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 38.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 38.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 38.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 38.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 38.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 38.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 38.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 38.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 38.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 37.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 37.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 37.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 37.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 37.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 37.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 37.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 37.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 37.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 36.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 36.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 36.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 36.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 36.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 36.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 36.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 36.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 35.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 35.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 35.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 35.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 35.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 35.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 35.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 35.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 35.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 35.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 35.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 34.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 34.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 34.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 34.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 34.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 34.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 34.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 34.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 33.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 33.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 33.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 33.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 33.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 32.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 32.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 32.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 32.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 32.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 32.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 32.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 32.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 32.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 32.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 31.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 31.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 31.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 31.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 30.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 29.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 29.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 29.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 29.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 29.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 29.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 29.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 28.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 28.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 27.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 27.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 27.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 27.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 25.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 38.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 38.9
FF:10151-102I7 76 years, female 38.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.3
Pig sample Sample description nTPM
Amygdala
nTPM: 37.3
Samples: 4

Max nTPM: 45.1
Min nTPM: 33.3
Sample A Female 45.1
Sample B Female 33.3
Sample C Male 35.0
Sample D Male 35.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 81.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 81.8
Samples: 4

Max nTPM: 84.7
Min nTPM: 79.4
Sample A Male 82.8
Sample B Male 79.4
Sample C Female 84.7
Sample D Female 80.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 15.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.3
68546524 Antisense, RP_050120_02_F06, Mouse strain C57BL/6J (56 days, male) 17.7
81599678 Antisense, RP_080103_01_C08, Mouse strain C57BL/6J (56 days, male) 12.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.