MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:21.6 nTPM
HPA:21.6 nTPM
GTEx:30.5 nTPM
FANTOM5:13.2 Scaled Tags Per Million
Pig:31.2 nTPM
Mouse:55.2 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.9
2586 Male, age 75, left hemisphere 21.0
2411 Female, age 72, unknown 19.0
1827 Male, age 72, unknown 18.7
2219 Male, age 76, both hemispheres 18.6
1870 Female, age 42, unknown 18.0
1833 Male, age 53, unknown 17.9
2828 Female, age 72, unknown 17.0
2666 Male, age 74, left hemisphere 16.4
1830 Male, age 51, unknown 16.2
2019 Male, age 18, unknown 15.5
Dorsal raphe nucleus
nTPM: 19.4
2298 Female, age 72, unknown 21.2
2047 Male, age 72, unknown 21.0
1828 Male, age 53, unknown 19.0
2750 Male, age 76, both hemispheres 18.7
2016 Female, age 72, unknown 17.0
Inferior colliculus
nTPM: 17.8
2097 Female, age 72, unknown 18.5
1890 Male, age 53, unknown 18.4
2849 Male, age 72, unknown 17.6
1848 Female, age 42, unknown 16.7
Median raphe nucleus
nTPM: 21.6
2220 Male, age 76, midline 21.6
Pedunculopontine tegmental nucleus
nTPM: 17.4
1921 Female, age 85, both hemispheres 18.9
2334 Male, age 80, both hemispheres 18.6
2338 Male, age 61, both hemispheres 14.8
Periaquaductal grey, anterior
nTPM: 18.8
1795 Male, age 51, unknown 19.7
1947 Male, age 18, unknown 18.6
2502 Female, age 75, unknown 18.2
Periaquaductal grey, dorsal
nTPM: 17.6
1840 Male, age 53, unknown 19.0
2850 Male, age 76, both hemispheres 18.1
1831 Male, age 72, unknown 17.3
2464 Female, age 72, unknown 16.0
Periaquaductal grey, lateral
nTPM: 17.3
2053 Male, age 18, unknown 18.3
2272 Male, age 74, both hemispheres 17.2
2140 Male, age 76, both hemispheres 16.3
Pretectal area
nTPM: 18.1
2825 Male, age 18, unknown 19.5
1816 Male, age 51, unknown 19.1
2667 Female, age 75, unknown 19.0
1944 Female, age 72, unknown 18.8
2224 Female, age 72, unknown 18.5
2273 Male, age 74, both hemispheres 18.4
2407 Male, age 75, both hemispheres 18.3
2007 Male, age 72, unknown 17.9
1817 Female, age 42, unknown 17.3
1815 Male, age 53, unknown 17.2
2316 Male, age 76, right hemisphere 15.1
Red nucleus
nTPM: 16.5
2725 Female, age 75, unknown 18.2
2588 Male, age 74, left hemisphere 17.7
1821 Female, age 72, unknown 17.0
2503 Female, age 72, unknown 16.7
2584 Male, age 75, left hemisphere 16.7
1954 Female, age 42, unknown 16.1
2227 Male, age 72, unknown 16.1
2785 Male, age 18, unknown 16.1
1865 Male, age 51, unknown 16.0
2769 Male, age 72, unknown 16.0
2823 Male, age 76, right hemisphere 15.6
1904 Male, age 53, unknown 15.5
Substantia nigra
nTPM: 19.7
1916 Female, age 42, unknown 24.5
1851 Male, age 51, unknown 21.1
2241 Male, age 72, unknown 20.9
2699 Male, age 18, unknown 20.3
1941 Male, age 53, unknown 19.6
2665 Male, age 74, both hemispheres 19.1
1889 Female, age 72, unknown 18.8
2583 Male, age 75, right hemisphere 18.2
2590 Female, age 75, unknown 17.5
2409 Female, age 72, unknown 17.2
Superior colliculus
nTPM: 17.4
2664 Male, age 75, both hemispheres 19.4
1796 Male, age 53, unknown 19.1
2587 Male, age 74, left hemisphere 17.9
2087 Female, age 72, unknown 17.6
2261 Male, age 18, unknown 17.4
2668 Female, age 75, unknown 17.1
1839 Male, age 51, unknown 17.0
1913 Female, age 42, unknown 16.8
1895 Male, age 76, right hemisphere 16.3
1995 Male, age 72, unknown 15.7
Ventral tegmental area
nTPM: 19.5
2410 Female, age 72, unknown 21.0
2218 Male, age 76, both hemispheres 20.3
1915 Female, age 42, unknown 20.2
1942 Male, age 51, unknown 19.0
2223 Female, age 72, unknown 18.9
2021 Male, age 53, unknown 17.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.5
Samples: 139

Max nTPM: 60.3
Min nTPM: 12.3
Std nTPM: 10.0
Median nTPM: 28.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 60.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 55.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 54.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 53.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 52.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 51.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 51.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 50.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 48.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 47.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 46.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.2
FF:10158-103A5 76 years, female 13.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.2
Pig sample Sample description nTPM
Midbrain
nTPM: 31.2
Samples: 4

Max nTPM: 42.5
Min nTPM: 24.4
Sample A Female 42.5
Sample B Female 30.5
Sample C Male 24.4
Sample D Male 27.2
Periaqueductal gray
nTPM: 24.7
Samples: 3

Max nTPM: 26.6
Min nTPM: 21.6
Sample B Female 25.8
Sample C Male 26.6
Sample D Male 21.6
Substantia nigra
nTPM: 29.3
Samples: 4

Max nTPM: 39.5
Min nTPM: 22.8
Sample A Female 39.5
Sample B Female 22.8
Sample C Male 29.5
Sample D Male 25.5
Superior colliculi
nTPM: 30.6
Samples: 4

Max nTPM: 38.6
Min nTPM: 24.5
Sample A Female 38.6
Sample B Female 24.5
Sample C Male 29.9
Sample D Male 29.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.3
Samples: 4

Max nTPM: 60.7
Min nTPM: 49.0
Sample A Male 60.7
Sample B Male 52.0
Sample C Female 49.0
Sample D Female 59.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
75931619 Antisense, RP_060606_01_E05, Mouse strain C57BL/6J (56 days, male) 0.0
67979019 Antisense, RP_040923_01_H10, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.