BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:34.6 nTPM
HPA:34.6 nTPM
GTEx:33.8 nTPM
FANTOM5:19.6 Scaled Tags Per Million
Pig:5.5 nTPM
Mouse:35.9 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 34.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.5
2481 Female, age 94, left hemisphere 35.6
1781 Male, age 74, unknown 35.2
2846 Female, age 79, unknown 34.9
2290 Female, age 72, unknown 34.8
2288 Male, age 75, left hemisphere 34.4
1857 Female, age 85, left hemisphere 33.8
2289 Male, age 61, right hemisphere 33.7
1854 Male, age 80, left hemisphere 33.4
Claustrum
nTPM: 34.4
2198 Male, age 80, both hemispheres 35.4
2196 Female, age 79, unknown 35.3
2284 Female, age 91, both hemispheres 34.8
2568 Male, age 61, both hemispheres 34.5
2491 Male, age 75, both hemispheres 34.4
1956 Male, age 74, unknown 34.3
2292 Female, age 85, both hemispheres 34.2
2645 Female, age 72, unknown 33.5
2392 Female, age 94, both hemispheres 33.1
Globus pallidus, externus
nTPM: 34.6
1996 Male, age 80, right hemisphere 36.0
2772 Female, age 79, unknown 35.5
2646 Male, age 61, right hemisphere 34.5
2395 Male, age 75, both hemispheres 33.7
2567 Female, age 72, unknown 33.5
Globus pallidus, internus
nTPM: 34.5
2287 Male, age 75, right hemisphere 36.8
2483 Female, age 94, right hemisphere 36.1
2778 Female, age 91, both hemispheres 35.2
1818 Male, age 74, unknown 33.6
2037 Male, age 80, right hemisphere 33.5
2111 Female, age 85, right hemisphere 33.3
2566 Female, age 72, unknown 33.1
Nucleus accumbens
nTPM: 34.3
2286 Male, age 75, left hemisphere 36.6
1806 Female, age 85, left hemisphere 35.3
1783 Male, age 74, unknown 34.3
2824 Male, age 61, right hemisphere 34.1
2698 Female, age 72, unknown 33.9
1856 Female, age 91, right hemisphere 33.7
2732 Male, age 80, right hemisphere 33.4
2391 Female, age 94, left hemisphere 33.3
Nucleus basalis of Meynert
nTPM: 34.2
2569 Male, age 61, both hemispheres 35.1
2821 Male, age 75, both hemispheres 35.0
2484 Female, age 94, left hemisphere 34.5
2393 Male, age 80, right hemisphere 32.4
Nucleus of the diagonal band
nTPM: 34.0
1979 Male, age 74, unknown 34.6
1812 Female, age 91, both hemispheres 34.5
2195 Female, age 85, both hemispheres 34.2
2775 Male, age 80, right hemisphere 34.1
2029 Male, age 61, right hemisphere 32.6
Olfactory tubercle
nTPM: 33.8
1846 Male, age 80, right hemisphere 34.5
2856 Male, age 75, right hemisphere 34.3
1998 Female, age 91, both hemispheres 33.4
2487 Female, age 94, left hemisphere 33.0
Putamen
nTPM: 34.2
2482 Female, age 94, left hemisphere 35.5
2647 Male, age 75, left hemisphere 35.1
2466 Female, age 79, unknown 34.5
2489 Female, age 72, unknown 34.3
1937 Female, age 91, right hemisphere 33.9
1829 Male, age 74, unknown 33.2
1838 Male, age 80, right hemisphere 33.1
Septal nuclei
nTPM: 34.1
1960 Male, age 74, unknown 35.0
2031 Female, age 72, unknown 34.9
2059 Female, age 85, both hemispheres 34.3
2629 Female, age 94, right hemisphere 34.1
2199 Male, age 80, right hemisphere 33.9
2394 Male, age 61, left hemisphere 33.3
2009 Female, age 91, both hemispheres 33.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 33.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.9
Samples: 246

Max nTPM: 56.6
Min nTPM: 13.6
Std nTPM: 7.0
Median nTPM: 30.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 56.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 55.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 50.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 48.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 48.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 46.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 45.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 45.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 45.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 45.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 43.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.1
Samples: 246

Max nTPM: 70.4
Min nTPM: 13.5
Std nTPM: 9.0
Median nTPM: 27.5
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 70.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 67.4
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 59.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 55.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 53.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 50.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 49.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 46.1
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 45.9
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 45.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 45.5
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Brain - Putamen (basal ganglia)
Average nTPM: 33.8
Samples: 205

Max nTPM: 62.0
Min nTPM: 16.0
Std nTPM: 7.4
Median nTPM: 33.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 62.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 51.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 49.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 49.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 49.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 49.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 48.0
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 47.6
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 47.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 47.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 46.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 19.4
FF:10164-103B2 76 years, female 19.4
Globus pallidus
Scaled Tags Per Million: 19.6
FF:10175-103C4 60 years, female 21.3
FF:10161-103A8 76 years, female 17.8
Nucleus accumbens
Scaled Tags Per Million: 16.3
FF:10037-101F1 23-56 years, mixed 16.3
Putamen
Scaled Tags Per Million: 18.5
FF:10176-103C5 60 years, female 18.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.5
Pig sample Sample description nTPM
Caudate
nTPM: 4.9
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 5.0
Sample C Male 5.4
Sample D Male 5.0
Putamen
nTPM: 4.4
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.6
Sample A Female 3.7
Sample B Female 4.8
Sample C Male 5.5
Sample D Male 3.6
Septum
nTPM: 5.5
Samples: 4

Max nTPM: 5.9
Min nTPM: 5.2
Sample A Female 5.6
Sample B Female 5.2
Sample C Male 5.9
Sample D Male 5.3
Ventral pallidum
nTPM: 4.9
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.2
Sample A Female 4.2
Sample B Female 5.1
Sample C Male 5.4
Sample D Male 4.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 35.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 35.9
Samples: 4

Max nTPM: 40.5
Min nTPM: 31.7
Sample A Male 39.3
Sample B Male 40.5
Sample C Female 31.7
Sample D Female 32.0
Septum
nTPM: 34.1
Samples: 4

Max nTPM: 38.8
Min nTPM: 29.1
Sample A Male 31.7
Sample B Male 38.8
Sample C Female 36.7
Sample D Female 29.1
Ventral forebrain
nTPM: 34.4
Samples: 4

Max nTPM: 37.9
Min nTPM: 31.2
Sample A Male 33.6
Sample B Male 34.7
Sample C Female 37.9
Sample D Female 31.2

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The Human Protein Atlas

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