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  • ST6GALNAC6
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:155.5 nTPM
HPA:155.5 nTPM
GTEx:163.7 nTPM
FANTOM5:163.2 Scaled Tags Per Million
Pig:34.5 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 155.5
Sample id Sample description nTPM
Amygdala
nTPM: 143.9
2517 Female, age 94, left hemisphere 157.1
2514 Male, age 75, right hemisphere 145.9
1987 Female, age 91, left hemisphere 144.0
2695 Female, age 67, right hemisphere 139.8
2814 Male, age 76, right hemisphere 132.7
Basal amygdala
nTPM: 155.5
2243 Female, age 91, right hemisphere 165.1
2609 Male, age 75, right hemisphere 162.8
2827 Female, age 67, right hemisphere 161.8
2685 Female, age 94, left hemisphere 157.8
2110 Male, age 80, left hemisphere 148.1
1955 Male, age 76, both hemispheres 137.2
Central amygdala
nTPM: 149.1
2826 Female, age 94, left hemisphere 170.4
2515 Male, age 75, right hemisphere 154.6
2239 Male, age 80, left hemisphere 148.3
2701 Female, age 91, right hemisphere 140.5
1905 Male, age 76, both hemispheres 131.7
Corticomedial amygdala
nTPM: 151.6
2829 Male, age 80, left hemisphere 162.6
2428 Male, age 75, right hemisphere 160.4
2242 Female, age 91, right hemisphere 156.6
2535 Female, age 67, right hemisphere 152.3
2429 Female, age 94, left hemisphere 143.0
2240 Male, age 76, both hemispheres 134.9
Lateral amygdala
nTPM: 152.1
2534 Female, age 94, left hemisphere 161.0
2830 Female, age 67, right hemisphere 159.4
2516 Male, age 75, right hemisphere 152.6
2255 Female, age 91, right hemisphere 150.9
2256 Male, age 80, left hemisphere 150.9
1883 Male, age 76, both hemispheres 138.0
Stria terminalis, bed nucleus
nTPM: 138.4
1974 Female, age 91, both hemispheres 142.9
2486 Female, age 94, both hemispheres 141.0
2201 Male, age 74, unknown 131.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 163.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 163.7
Samples: 152

Max nTPM: 358.2
Min nTPM: 21.9
Std nTPM: 50.3
Median nTPM: 158.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 358.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 329.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 304.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 281.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 259.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 253.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 253.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 244.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 238.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 238.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 233.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 230.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 230.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 229.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 228.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 226.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 221.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 220.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 218.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 215.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 214.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 212.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 210.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 208.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 206.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 203.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 203.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 202.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 202.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 202.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 201.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 199.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 197.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 196.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 195.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 195.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 194.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 194.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 193.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 192.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 192.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 190.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 190.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 189.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 188.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 188.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 186.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 184.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 184.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 183.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 182.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 181.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 180.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 180.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 180.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 179.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 179.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 178.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 176.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 176.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 176.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 176.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 175.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 173.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 173.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 173.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 167.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 166.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 166.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 165.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 165.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 165.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 165.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 162.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 162.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 158.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 158.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 158.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 157.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 157.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 156.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 156.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 155.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 154.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 152.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 151.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 151.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 150.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 149.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 148.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 147.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 147.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 146.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 145.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 144.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 143.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 143.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 142.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 142.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 141.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 140.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 138.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 137.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 136.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 136.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 136.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 135.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 134.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 132.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 130.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 130.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 130.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 129.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 129.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 127.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 127.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 127.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 126.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 126.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 124.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 124.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 123.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 123.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 122.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 122.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 119.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 117.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 116.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 115.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 114.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 113.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 113.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 112.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 111.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 110.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 110.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 105.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 102.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 99.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 98.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 98.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 98.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 96.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 88.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 87.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 86.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 85.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 83.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 81.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 74.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 53.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 21.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 163.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 163.2
FF:10151-102I7 76 years, female 163.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 34.5
Pig sample Sample description nTPM
Amygdala
nTPM: 34.5
Samples: 4

Max nTPM: 43.8
Min nTPM: 27.2
Sample A Female 43.8
Sample B Female 27.2
Sample C Male 34.6
Sample D Male 32.3

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