HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.3 nTPM
HPA:16.3 nTPM
GTEx:10.5 nTPM
FANTOM5:18.9 Scaled Tags Per Million
Pig:1.6 nTPM
Mouse:3.2 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.3
Sample id Sample description nTPM
Hippocampus
nTPM: 13.6
2529 Female, age 94, left hemisphere 16.5
1898 Male, age 80, left hemisphere 14.8
2621 Female, age 67, right hemisphere 14.6
2148 Female, age 91, left hemisphere 12.7
1911 Female, age 85, right hemisphere 11.8
1855 Male, age 76, left hemisphere 11.5
Dentate gyrus
nTPM: 14.6
2530 Female, age 94, left hemisphere 16.3
2010 Male, age 76, both hemispheres 15.8
2531 Female, age 67, both hemispheres 15.8
2246 Female, age 85, both hemispheres 13.4
2528 Male, age 74, both hemispheres 13.3
1927 Female, age 91, both hemispheres 13.2
Entorhinal gyrus
nTPM: 14.8
2764 Male, age 80, right hemisphere 17.5
1787 Male, age 76, left hemisphere 16.8
1938 Female, age 85, left hemisphere 16.5
2117 Female, age 91, right hemisphere 13.9
2613 Female, age 94, left hemisphere 12.9
2686 Male, age 75, right hemisphere 11.4
Hippocampus, CA1
nTPM: 14.8
2749 Male, age 80, left hemisphere 16.5
2045 Male, age 76, both hemispheres 15.7
2082 Female, age 91, right hemisphere 15.4
2527 Male, age 74, both hemispheres 14.3
1873 Female, age 85, both hemispheres 12.3
Hippocampus, CA2
nTPM: 15.0
1892 Male, age 76, both hemispheres 16.6
1940 Female, age 85, left hemisphere 15.9
2437 Female, age 94, left hemisphere 15.3
2249 Male, age 74, both hemispheres 14.7
2113 Female, age 91, right hemisphere 14.3
1963 Male, age 80, left hemisphere 13.1
Hippocampus, CA3
nTPM: 14.8
1867 Male, age 76, both hemispheres 18.3
2620 Female, age 94, left hemisphere 15.8
2436 Male, age 74, both hemispheres 14.4
2861 Female, age 67, both hemispheres 14.1
2137 Male, age 80, left hemisphere 14.0
1891 Female, age 85, both hemispheres 12.1
Parahippocampal cortex
nTPM: 15.0
2250 Female, age 67, right hemisphere 17.0
1990 Female, age 91, right hemisphere 16.4
2532 Female, age 72, left hemisphere 16.0
2018 Male, age 76, both hemispheres 15.7
2245 Female, age 91, both hemispheres 15.4
1850 Male, age 80, both hemispheres 15.1
1933 Female, age 85, both hemispheres 15.1
2622 Female, age 67, right hemisphere 14.3
2693 Female, age 94, both hemispheres 12.6
2692 Male, age 74, both hemispheres 12.2
Perirhinal gyrus
nTPM: 16.3
1794 Male, age 80, right hemisphere 17.8
1847 Female, age 91, left hemisphere 17.5
1841 Female, age 85, right hemisphere 15.9
2848 Male, age 76, right hemisphere 15.6
2521 Female, age 94, right hemisphere 14.7
Subiculum
nTPM: 14.0
1977 Female, age 85, both hemispheres 16.7
2042 Male, age 76, both hemispheres 15.7
2619 Male, age 74, both hemispheres 14.4
1901 Male, age 80, both hemispheres 13.3
2729 Female, age 91, right hemisphere 12.0
2438 Female, age 94, left hemisphere 11.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.5
Samples: 197

Max nTPM: 77.1
Min nTPM: 2.9
Std nTPM: 7.0
Median nTPM: 9.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 77.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 49.2
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 34.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 27.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 27.0
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 25.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 23.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 21.6
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 20.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 18.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 17.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 18.9
FF:10153-102I9 76 years, female 23.2
FF:10169-103B7 60 years, female 14.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 1.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 1.5
Samples: 4

Max nTPM: 1.8
Min nTPM: 1.0
Sample A Female 1.5
Sample B Female 1.8
Sample C Male 1.5
Sample D Male 1.0
Entorhinal cortex
nTPM: 1.3
Samples: 4

Max nTPM: 1.5
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 1.5
Sample C Male 1.5
Sample D Male 1.2
Subiculum
nTPM: 1.6
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.4
Sample A Female 1.6
Sample B Female 1.4
Sample C Male 1.7
Sample D Male 1.7
Ventral hippocampus
nTPM: 1.6
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.3
Sample A Female 1.3
Sample B Female 1.3
Sample C Male 2.0
Sample D Male 1.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 3.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 3.3
Samples: 4

Max nTPM: 4.3
Min nTPM: 2.0
Sample A Male 4.3
Sample B Male 4.2
Sample C Female 2.0
Sample D Female 2.5
Hippocampal formation
nTPM: 1.7
Samples: 4

Max nTPM: 3.0
Min nTPM: 0.9
Sample A Male 1.4
Sample B Male 1.6
Sample C Female 0.9
Sample D Female 3.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
68162246 Antisense, RP_041122_02_E01, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.