MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:50.7 nTPM
HPA:50.7 nTPM
GTEx:46.8 nTPM
FANTOM5:149.7 Scaled Tags Per Million
Pig:68.7 nTPM
Mouse:103.8 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.9
1833 Male, age 53, unknown 50.3
2411 Female, age 72, unknown 50.3
1830 Male, age 51, unknown 50.2
1870 Female, age 42, unknown 50.2
2019 Male, age 18, unknown 48.4
2828 Female, age 72, unknown 47.7
1827 Male, age 72, unknown 46.7
2666 Male, age 74, left hemisphere 46.0
2219 Male, age 76, both hemispheres 45.9
2586 Male, age 75, left hemisphere 43.7
Dorsal raphe nucleus
nTPM: 47.1
2750 Male, age 76, both hemispheres 50.3
2016 Female, age 72, unknown 48.0
1828 Male, age 53, unknown 47.1
2047 Male, age 72, unknown 45.1
2298 Female, age 72, unknown 45.1
Inferior colliculus
nTPM: 46.7
2097 Female, age 72, unknown 46.9
1890 Male, age 53, unknown 46.8
1848 Female, age 42, unknown 46.7
2849 Male, age 72, unknown 46.5
Median raphe nucleus
nTPM: 46.6
2220 Male, age 76, midline 46.6
Pedunculopontine tegmental nucleus
nTPM: 48.3
2334 Male, age 80, both hemispheres 49.0
2338 Male, age 61, both hemispheres 48.4
1921 Female, age 85, both hemispheres 47.6
Periaquaductal grey, anterior
nTPM: 45.1
1947 Male, age 18, unknown 46.4
2502 Female, age 75, unknown 44.7
1795 Male, age 51, unknown 44.1
Periaquaductal grey, dorsal
nTPM: 45.7
2464 Female, age 72, unknown 46.8
1831 Male, age 72, unknown 46.5
1840 Male, age 53, unknown 45.1
2850 Male, age 76, both hemispheres 44.6
Periaquaductal grey, lateral
nTPM: 46.2
2272 Male, age 74, both hemispheres 47.5
2053 Male, age 18, unknown 46.4
2140 Male, age 76, both hemispheres 44.7
Pretectal area
nTPM: 47.4
2667 Female, age 75, unknown 49.8
1815 Male, age 53, unknown 49.0
2273 Male, age 74, both hemispheres 48.8
2316 Male, age 76, right hemisphere 48.6
2407 Male, age 75, both hemispheres 48.1
2825 Male, age 18, unknown 47.7
1817 Female, age 42, unknown 47.6
2224 Female, age 72, unknown 46.3
2007 Male, age 72, unknown 46.0
1944 Female, age 72, unknown 44.8
1816 Male, age 51, unknown 44.5
Red nucleus
nTPM: 50.7
2823 Male, age 76, right hemisphere 53.5
1821 Female, age 72, unknown 52.8
1865 Male, age 51, unknown 52.2
1904 Male, age 53, unknown 51.5
2227 Male, age 72, unknown 51.1
2503 Female, age 72, unknown 51.1
1954 Female, age 42, unknown 51.0
2769 Male, age 72, unknown 50.4
2725 Female, age 75, unknown 50.1
2588 Male, age 74, left hemisphere 49.1
2785 Male, age 18, unknown 48.0
2584 Male, age 75, left hemisphere 47.1
Substantia nigra
nTPM: 47.3
2241 Male, age 72, unknown 49.2
2699 Male, age 18, unknown 49.1
1889 Female, age 72, unknown 48.0
1851 Male, age 51, unknown 47.9
2583 Male, age 75, right hemisphere 47.6
2590 Female, age 75, unknown 46.6
1941 Male, age 53, unknown 46.2
2409 Female, age 72, unknown 46.2
1916 Female, age 42, unknown 46.0
2665 Male, age 74, both hemispheres 45.8
Superior colliculus
nTPM: 47.3
1895 Male, age 76, right hemisphere 51.3
1913 Female, age 42, unknown 50.8
1995 Male, age 72, unknown 48.9
1839 Male, age 51, unknown 48.0
2587 Male, age 74, left hemisphere 47.8
2668 Female, age 75, unknown 46.3
1796 Male, age 53, unknown 45.8
2087 Female, age 72, unknown 45.2
2261 Male, age 18, unknown 45.1
2664 Male, age 75, both hemispheres 43.9
Ventral tegmental area
nTPM: 47.0
2223 Female, age 72, unknown 47.9
2410 Female, age 72, unknown 47.9
1915 Female, age 42, unknown 47.3
2218 Male, age 76, both hemispheres 47.3
1942 Male, age 51, unknown 46.2
2021 Male, age 53, unknown 45.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.8
Samples: 139

Max nTPM: 84.0
Min nTPM: 35.1
Std nTPM: 7.9
Median nTPM: 45.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 84.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 71.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 71.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 68.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 68.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 67.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 65.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 63.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 62.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 62.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 62.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 149.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 149.7
FF:10158-103A5 76 years, female 149.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 68.7
Pig sample Sample description nTPM
Midbrain
nTPM: 68.7
Samples: 4

Max nTPM: 104.4
Min nTPM: 50.1
Sample A Female 104.4
Sample B Female 66.3
Sample C Male 54.0
Sample D Male 50.1
Periaqueductal gray
nTPM: 59.9
Samples: 3

Max nTPM: 64.4
Min nTPM: 56.1
Sample B Female 64.4
Sample C Male 59.3
Sample D Male 56.1
Substantia nigra
nTPM: 64.7
Samples: 4

Max nTPM: 78.0
Min nTPM: 57.7
Sample A Female 78.0
Sample B Female 57.7
Sample C Male 60.8
Sample D Male 62.2
Superior colliculi
nTPM: 67.5
Samples: 4

Max nTPM: 79.3
Min nTPM: 59.9
Sample A Female 79.3
Sample B Female 68.6
Sample C Male 59.9
Sample D Male 62.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 103.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 103.8
Samples: 4

Max nTPM: 107.6
Min nTPM: 100.5
Sample A Male 105.8
Sample B Male 101.3
Sample C Female 100.5
Sample D Female 107.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69134556 Antisense, RP_050321_03_B03, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.