BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:35.9 nTPM
HPA:35.9 nTPM
GTEx:30.4 nTPM
FANTOM5:56.3 Scaled Tags Per Million
Mouse:6.6 nTPM
Allen mouse:1.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 35.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 31.8
1854 Male, age 80, left hemisphere 32.6
2846 Female, age 79, unknown 32.5
2481 Female, age 94, left hemisphere 32.4
2288 Male, age 75, left hemisphere 32.0
2290 Female, age 72, unknown 31.6
1781 Male, age 74, unknown 31.5
1857 Female, age 85, left hemisphere 31.3
2289 Male, age 61, right hemisphere 30.4
Claustrum
nTPM: 31.8
2292 Female, age 85, both hemispheres 33.8
1956 Male, age 74, unknown 32.3
2196 Female, age 79, unknown 31.9
2198 Male, age 80, both hemispheres 31.9
2645 Female, age 72, unknown 31.7
2491 Male, age 75, both hemispheres 31.6
2568 Male, age 61, both hemispheres 31.5
2284 Female, age 91, both hemispheres 30.8
2392 Female, age 94, both hemispheres 30.8
Globus pallidus, externus
nTPM: 35.8
2646 Male, age 61, right hemisphere 38.4
1996 Male, age 80, right hemisphere 36.8
2772 Female, age 79, unknown 35.4
2567 Female, age 72, unknown 35.3
2395 Male, age 75, both hemispheres 32.9
Globus pallidus, internus
nTPM: 35.9
2566 Female, age 72, unknown 37.4
2111 Female, age 85, right hemisphere 37.3
2778 Female, age 91, both hemispheres 36.6
2037 Male, age 80, right hemisphere 36.4
1818 Male, age 74, unknown 34.7
2287 Male, age 75, right hemisphere 34.6
2483 Female, age 94, right hemisphere 34.0
Nucleus accumbens
nTPM: 32.4
2698 Female, age 72, unknown 34.2
2732 Male, age 80, right hemisphere 33.5
1806 Female, age 85, left hemisphere 32.9
1783 Male, age 74, unknown 32.7
2824 Male, age 61, right hemisphere 32.7
2286 Male, age 75, left hemisphere 32.1
2391 Female, age 94, left hemisphere 31.3
1856 Female, age 91, right hemisphere 30.1
Nucleus basalis of Meynert
nTPM: 33.1
2569 Male, age 61, both hemispheres 38.3
2393 Male, age 80, right hemisphere 31.9
2821 Male, age 75, both hemispheres 31.8
2484 Female, age 94, left hemisphere 30.4
Nucleus of the diagonal band
nTPM: 32.1
1979 Male, age 74, unknown 33.2
2029 Male, age 61, right hemisphere 32.8
1812 Female, age 91, both hemispheres 32.3
2775 Male, age 80, right hemisphere 31.3
2195 Female, age 85, both hemispheres 30.8
Olfactory tubercle
nTPM: 31.2
2856 Male, age 75, right hemisphere 31.5
1846 Male, age 80, right hemisphere 31.4
2487 Female, age 94, left hemisphere 31.3
1998 Female, age 91, both hemispheres 30.8
Putamen
nTPM: 32.1
2647 Male, age 75, left hemisphere 33.1
1838 Male, age 80, right hemisphere 32.4
2489 Female, age 72, unknown 32.3
1829 Male, age 74, unknown 32.1
2482 Female, age 94, left hemisphere 32.1
2466 Female, age 79, unknown 31.4
1937 Female, age 91, right hemisphere 31.0
Septal nuclei
nTPM: 31.6
2059 Female, age 85, both hemispheres 33.2
2394 Male, age 61, left hemisphere 32.9
2199 Male, age 80, right hemisphere 32.5
1960 Male, age 74, unknown 31.1
2009 Female, age 91, both hemispheres 30.9
2629 Female, age 94, right hemisphere 30.8
2031 Female, age 72, unknown 30.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 30.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.8
Samples: 246

Max nTPM: 68.5
Min nTPM: 11.5
Std nTPM: 7.3
Median nTPM: 25.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 68.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 53.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 48.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 48.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 45.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 45.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 44.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 43.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 42.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 42.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 41.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.7
Samples: 246

Max nTPM: 77.3
Min nTPM: 9.4
Std nTPM: 8.3
Median nTPM: 27.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 77.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 60.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 57.0
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 56.2
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 53.9
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 48.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 44.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 44.5
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 44.3
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 44.2
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 43.3
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Brain - Putamen (basal ganglia)
Average nTPM: 30.4
Samples: 205

Max nTPM: 65.9
Min nTPM: 15.3
Std nTPM: 7.4
Median nTPM: 29.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 65.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 60.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 56.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 50.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 48.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 46.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 45.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 45.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 45.6
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 45.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 43.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 47.1
FF:10164-103B2 76 years, female 47.1
Globus pallidus
Scaled Tags Per Million: 54.4
FF:10175-103C4 60 years, female 58.4
FF:10161-103A8 76 years, female 50.4
Nucleus accumbens
Scaled Tags Per Million: 46.5
FF:10037-101F1 23-56 years, mixed 46.5
Putamen
Scaled Tags Per Million: 56.3
FF:10176-103C5 60 years, female 56.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 6.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.5
Samples: 4

Max nTPM: 6.2
Min nTPM: 5.0
Sample A Male 5.3
Sample B Male 5.4
Sample C Female 6.2
Sample D Female 5.0
Septum
nTPM: 6.5
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.9
Sample A Male 7.3
Sample B Male 6.0
Sample C Female 5.9
Sample D Female 6.7
Ventral forebrain
nTPM: 6.6
Samples: 4

Max nTPM: 7.5
Min nTPM: 6.0
Sample A Male 6.0
Sample B Male 6.1
Sample C Female 6.9
Sample D Female 7.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.1
74822930 Antisense, RP_060321_01_A03, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 1.0
74822930 Antisense, RP_060321_01_A03, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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